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General discussions (Q&As) / helical parameters for damged conformation of the DNA
« on: November 02, 2016, 08:12:11 am »
Hi xiangjun,
I have obtained helical parameters for damaged DNA from trajectory by using 3DNA, there are three mismatched T:T pairs and a bend in the DNA. However when I calculated the averages have got large deviations in the damaged regions. Would you please check my plot and suggest me whether these kind of deviations are allowed or not. Where shall we find the basic definitions of all these parameters ?
Thanks in Advance.
Kartheek Joshua .
I have obtained helical parameters for damaged DNA from trajectory by using 3DNA, there are three mismatched T:T pairs and a bend in the DNA. However when I calculated the averages have got large deviations in the damaged regions. Would you please check my plot and suggest me whether these kind of deviations are allowed or not. Where shall we find the basic definitions of all these parameters ?
Thanks in Advance.
Kartheek Joshua .