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General discussions (Q&As) / Analyzing some pdb files of bent DNA
« on: January 14, 2013, 03:09:29 pm »
Hello,
I was trying the web 3DNA interface to analyze the bent DNA for pdbid: 2O8B.pdb or 2O8C.pdb. The local base pair step parameters at the site of non canonical base pair are shown as ----. Also Guanine is designated as 'g', not 'G'. Is there some problem with pdb file or something is not recognized by 3DNA?

Thank you in advance
Regards
Monika

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.