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General discussions (Q&As) / calculate step parameters of a funny step
« on: July 23, 2008, 10:54:49 am »
HI! Xiangjun:
I can't get the values of step parameters of step 57 in the pdb file attached here (2f8n.pdb). I checked the 3D-structure. The base pair 58 (58 G and 233 C) in dimer step 57 is a funny base pair, whose Propeller is -60 degree ( I attach a picture of step 57). I guess, 3DNA might put some constrains to base pairs so that I can't get the value of step parameters of step 57. How can I avoid the constrains and get the values of the step parameters
Thanks!
Best,
Fei
I can't get the values of step parameters of step 57 in the pdb file attached here (2f8n.pdb). I checked the 3D-structure. The base pair 58 (58 G and 233 C) in dimer step 57 is a funny base pair, whose Propeller is -60 degree ( I attach a picture of step 57). I guess, 3DNA might put some constrains to base pairs so that I can't get the value of step parameters of step 57. How can I avoid the constrains and get the values of the step parameters
Thanks!
Best,
Fei