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HI! Xiangjun:
I can't get the values of step parameters of step 57 in the pdb file attached here (2f8n.pdb). I checked the 3D-structure. The base pair 58 (58 G and 233 C) in dimer step 57 is a funny base pair, whose Propeller is -60 degree ( I attach a picture of step 57). I guess, 3DNA might put some constrains to base pairs so that I can't get the value of step parameters of step 57. How can I avoid the constrains and get the values of the step parameters




General discussions (Q&As) / the center of a dimer step
« on: September 29, 2006, 01:53:02 pm »
HI! Xiangjun:
In which file among the 3DNA output files can I find the center of a dimer step?
Thanks a lot!

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.