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RNA structures (DSSR) / Re: Rebuilding circular Z-DNA
« on: June 02, 2025, 04:44:26 am »
Hi Xiang-Jun,
I've included my detailed procedure in this Evernote for your review: https://share.evernote.com/note/b6bd8283-bcad-58aa-0725-95dc61a9c6e0
I hope you can help explain why Y-shift is introduced when generating your B-DNA ring. Also, I think you would have a better idea than me of creating a Z-DNA ring with higher accuracy by taking into account the spatial relationship of the helical axis and the bp.
Thanks,
Di
I've included my detailed procedure in this Evernote for your review: https://share.evernote.com/note/b6bd8283-bcad-58aa-0725-95dc61a9c6e0
I hope you can help explain why Y-shift is introduced when generating your B-DNA ring. Also, I think you would have a better idea than me of creating a Z-DNA ring with higher accuracy by taking into account the spatial relationship of the helical axis and the bp.
Thanks,
Di