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Messages - miriam.llamas

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General discussions (Q&As) / How to calculate DNA bending angles in protein/DNA complex
« on: March 21, 2018, 07:40:15 pm »
Hi Xiang-Jun

In your 2008 3DNA Nature Protocols paper, you explain how to calculate DNA bending angle, i followed the instructions and determinate the angle but in the case of CAP/DNA complex (PDB 1ZRC), i don't have the normalized vector along the "best-fit" helical axis. How can i calculate DNA bending angle of this complex?

Thanks

Miriam

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University