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General discussions (Q&As) / problems with find pair dont recognize modificated base pair
« on: August 24, 2006, 02:48:33 am »
Hi
>
> Im work with X3DNA, im try use this program to analyze structure of
> modificated dna strands. I hawe create nucleic acid strand witch is
> build from 24 base pairs one of them was modificated and molecule off
> guanine was replaced by 8oxoguanine this structure was writen on the end
> of pdb file as molecule number 49. I hawe problem with creating input
> file because program dont recognize base pair wich contain 8oxoguanine
> molecule. I had modificated basepair.dat file and add ATOMIC.PDB file of
> 8oxoguanie. what schould i do to corectly describe this structure.
> Przemek Czeleñ
>
> Im work with X3DNA, im try use this program to analyze structure of
> modificated dna strands. I hawe create nucleic acid strand witch is
> build from 24 base pairs one of them was modificated and molecule off
> guanine was replaced by 8oxoguanine this structure was writen on the end
> of pdb file as molecule number 49. I hawe problem with creating input
> file because program dont recognize base pair wich contain 8oxoguanine
> molecule. I had modificated basepair.dat file and add ATOMIC.PDB file of
> 8oxoguanie. what schould i do to corectly describe this structure.
> Przemek Czeleñ