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RNA structures (DSSR) / Analysis of trajectory from Molecular Dynamics
« on: July 07, 2020, 11:53:48 pm »
Dear Professor Xiang-Jun,
I found this old post (http://forum.x3dna.org/feature-requests/trajectory-over-time/) regarding the analysis of an entire trajectory from MDs.
In that post your response was: 3DNA -- you may want to try the x3dna_ensemble Ruby script...
using do_x3dna and
DSSR -- there is no similar functionality yet
Given that do_x3dna seems to be outdated, I was wondering if still DSSR can not handle entire trajectories from MDs.
Also, I would like to ask, if I have a complete trajectory in some binary format and I convert such trajectory to a pdb file, DSSR would be able to
analyze the trajectory? The web version of DSSR seems to handle trajectories for around 50 frames...
Thanks a lot in advance
S h.v
I found this old post (http://forum.x3dna.org/feature-requests/trajectory-over-time/) regarding the analysis of an entire trajectory from MDs.
In that post your response was: 3DNA -- you may want to try the x3dna_ensemble Ruby script...
using do_x3dna and
DSSR -- there is no similar functionality yet
Given that do_x3dna seems to be outdated, I was wondering if still DSSR can not handle entire trajectories from MDs.
Also, I would like to ask, if I have a complete trajectory in some binary format and I convert such trajectory to a pdb file, DSSR would be able to
analyze the trajectory? The web version of DSSR seems to handle trajectories for around 50 frames...
Thanks a lot in advance
S h.v