This section allows you to view all posts made by this member. Note that you can only see posts made in areas you currently have access to.
Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing
· Video Overview· RNA Covers
Topics - Jane
Pages: [1]
1
« on: March 25, 2013, 01:49:52 pm »
Hi, Xiangjun!
I am a little confused about zero or even negative helical rise for some base-pair step parameter output, for example DNA in PDBID 1XVK. Do you have any comment or reference on this ? Thanks a lot!
Best,
Jane
2
« on: January 11, 2013, 01:35:30 pm »
Hi!
I am confused with the meaning of the +/- values of the local base pair parameters, like opening, shear, ect. I noticed in a Bform DNA duplex, a AT(looking from the primary strand) pair usually have a + opening while a TA pair usually has a -opening angles. Is +/- supposed to differentiate this kind of situation? I checked the two pair in pymol and can not tell any differences between the opening the + and - opening angles(both open to the major groove side.) Thanks!
Pages: [1]
Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids
Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University
Show Posts
