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General discussions (Q&As) / building a ssDNA
« on: March 07, 2011, 10:29:41 pm »
Dear All,

I just started using 3DNA. I want to build a pdb file for single strand DNA that I can use in gromacs to simulate interaction between DNA and CNT. I skimmed through the manual, but don't understand how to get started. Could anyone please highlight what should I look into to create this pdb file?

Thanks,
Majid

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University