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Messages - Shreya Ghosh
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« on: April 18, 2020, 07:45:15 pm »
I generated a proper .par file but I was not able to generate a proper pdb file. My pdb file only contains the DNA bases without the P, C5', C4' and other backbone atoms.
How can I amend the error?
Thank you.
2
« on: April 18, 2020, 07:29:47 pm »
After creating a .par file, I tried to create a pdb.
I used the BuildNucleicAcids.py function and mentioned the DNA type and other details. It generated a pdb file without the DNA backbone atoms (attached image).
Could you please let me know how to generate a proper pdb file with the appropriate DNA backbone atoms?
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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids
Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University
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