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Messages - elodiem

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RNA structures (DSSR) / Re: automatically count the number of nucleotides involved in RNA helices
« on: July 27, 2018, 06:55:37 am »

Hello,
yes it is right. I just want to generate an excel file telling me exactly the number of nucleotides per helices to do some statistic. Do you think it is possible?
thanks

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RNA structures (DSSR) / automatically count the number of nucleotides involved in RNA helices
« on: July 26, 2018, 10:11:31 pm »
Hello,
I have determined reactivities of approximately 2000 nucleotides of several RNA samples using SHAPE and generated dot bracket files. I am able to fold RNAs using these reactivities using RNA structure but I also would like to automatically determine the position and the number of nucleotides involved in helices. Is it possible to do this type of analysis with a software?

thanks for your help

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University