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Author Topic: base overlap  (Read 1575 times)

Offline maryatx3dna

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base overlap
« on: July 25, 2015, 03:55:43 am »
Sir,

is there any way i could extract the stacked base overlap area as a function of time?
could i extract overlap area in analysis o/p

Offline xiangjun

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Re: base overlap
« Reply #1 on: July 25, 2015, 09:34:41 am »
Will the Ruby script x3dna_ensemble distributed with 3DNA do the trick?

Alternatively, you may want to get do_x3dna a try.

HTH,

Xiang-Jun
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

Offline maryatx3dna

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Re: base overlap
« Reply #2 on: July 26, 2015, 11:39:16 am »
ok sir

 

Created and maintained by Dr. Xiang-Jun Lu[律祥俊]· Supported by the NIH grant R01GM096889 · Dr. Lu is currently a member of the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University. The project is in collabration with the Olson Laborarory at Rutgers where 3DNA got started.