Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

« previous next »
Pages: [1]   Go Down

Author Topic: Methodology for sugar puckering calcualtion  (Read 15569 times)

Offline aneeshcna

  • with-posts
  • *
  • Posts: 9
    • View Profile
Methodology for sugar puckering calcualtion
« on: July 23, 2010, 05:30:10 am »
Dear 3DNA users,

                Can anyone tell me what methodology ( mathematics) 3DNA using for calculating sugar puckering in nucleotides ( any reference ) ?.

Thanks in advance

Sincerely
Aneesh
Logged

Offline xiangjun

  • Administrator
  • with-posts
  • *****
  • Posts: 1650
    • View Profile
    • 3DNA homepage
Re: Methodology for sugar puckering calcualtion
« Reply #1 on: July 23, 2010, 07:34:52 pm »
The reference is: Altona, C. & Sundaralingam, M. (1972) "Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudorotation." J. Am. Chem. Soc. 94, 8205-8212. See the SHCNAaP paper for further details; as mentioned in Section SCHNAaP/SCHNArP of the forum, [mono:2tedyoak]analyze[/mono:2tedyoak] in 3DNA is derived directly from SCHNAaP.

HTH,

Xiang-Jun
Logged

Offline aneeshcna

  • with-posts
  • *
  • Posts: 9
    • View Profile
Re: Methodology for sugar puckering calcualtion
« Reply #2 on: July 24, 2010, 01:34:49 am »
Dear Dr. Xiang-Jun,

Thanks for your quick reply


regards
Aneesh
Logged
Pages: [1]   Go Up
« previous next »
 

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University