Notice: The 3DNA Forum is now a read-only archive. See the announcement.
All active support and discussions have moved to GitHub Discussions!

Author Topic: old Curves?  (Read 102504 times)

Offline ara

  • with-posts
  • *
  • Posts: 5
    • View Profile
old Curves?
« on: July 26, 2013, 05:17:07 pm »
Dear 3DNA community,

I know this is a 3DNA forum, however, I have a question about Curves. I did not find any Curves forum and I really like this forum and found it helpful in many ways.
I am analyzing DNA bending from molecular dynamics trajectories based on crystal structure of a drug-DNA complex. The crystal structure DNA bending was calculated with the old Curves program (Curves 5.2). I wanted to also use this old Curves for calculating DNA bending but I could not find it online. I do see some research groups that use both Curves and Curves+ to compare their results (A measure of bending in nucleic acids structures applied to A-tract DNA. F. Lankaš, N. Špačková, [...], and J. Šponer. Nucleic Acids Res. 2010 June; 38(10): 3414–3422). So i was wondering if anyone is aware if the old Curves is still available? Or currently there is only Curves+?

Thank you in advance,

Ara

Offline xiangjun

  • Administrator
  • with-posts
  • *****
  • Posts: 1746
    • View Profile
    • 3DNA homepage
Re: old Curves?
« Reply #1 on: July 26, 2013, 08:16:59 pm »
Hi Ara,

Thanks for posting on the 3DNA Forum; questions about Curve/Curves+ are certainly not out of topic here.

To get a copy of the "old Curves", did you contact the authors, especially Dr. Richard Lavery? Alternatively, you may check with Dr. Remo Rohs who (as I am aware of) is still using the 'old Curves' (see a recent paper from his lab, titled "DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale").

Xiang-Jun
Dr. Xiang-Jun Lu[律祥俊]
Email: xiangjun@x3dna.org
Homepage: https://x3dna.org
wDSSR: https://web.x3dna-dssr.org
GitHub: https://github.com/x3dna-dssr

Offline ara

  • with-posts
  • *
  • Posts: 5
    • View Profile
Re: old Curves?
« Reply #2 on: July 27, 2013, 04:14:03 pm »
Thank you Xiang-Jun!

I did contact Dr. Lavery, however have not heard back from him yet. And thank you for the information about Dr. Rohs!

Ara

 

This forum is archived. Please post new questions on GitHub Discussions!