Messages

1

FAQs / Re: How do I build nucleic acid structures with sugar-phosphate backbone?

« on: April 18, 2020, 07:45:15 pm »

I generated a proper .par file but I was not able to generate a proper pdb file. My pdb file only contains the DNA bases without the P, C5', C4' and other backbone atoms.

How can I amend the error?

Thank you.

2

General discussions (Q&As) / Generating PDB file

« on: April 18, 2020, 07:29:47 pm »

After creating a .par file, I tried to create a pdb.

I used the BuildNucleicAcids.py function and mentioned the DNA type and other details. It generated a pdb file without the DNA backbone atoms (attached image).

Could you please let me know how to generate a proper pdb file with the appropriate DNA backbone atoms?