Messages

1

General discussions (Q&As) / Re: HADDOCK run could not be processed

« on: November 29, 2017, 04:38:35 pm »

Hello, I'm very thankful for you help ,but there is still an error. "It says incorrectly formatted and please align the columns of your PDB properly". I'm not sure how to fix the problem. I have attached all 3 pdb files. DNA.pdb being the original file, dna-new.pdb being the first file you sent me and finally dna-new2.pdb being the final file you just sent me.

2

General discussions (Q&As) / Re: HADDOCK run could not be processed

« on: November 29, 2017, 01:21:55 pm »

I submitted the file you sent me to HADDOCK and now the emails says "Second pdb file contains an unknown amino acid or nucelic acid base DT". Make sure to use three letter code for bases and amino acid. I got this file from 3D-Dart. I have attached two file to this email. The file under the name of "DNA- new" is the file you sent me a while ago and the file with the name of "DNA" is the original file. Please help me out with this problem.

3

General discussions (Q&As) / HADDOCK run could not be processed

« on: November 29, 2017, 12:06:10 pm »

Hello , I am having difficulty uploading a file to HADDOCK. I keep receiving an email that states "PDB file is incorrectly formatted. Is there any way I could fix the problem? I have attached the file to this message.