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General discussions (Q&As) / Re: Adding a modified or non standard bases in a default library
« on: November 20, 2019, 11:58:38 am »
Dear Prof. xiangjun, thanks for your suggestion. It worked with do_x3dna VMD plugin.

Thanks,
Tanashree

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General discussions (Q&As) / Re: Adding a modified or non standard bases in a default library
« on: November 20, 2019, 08:45:56 am »
Thanks, Prof. xiangjun for your prompt reply. I tried with the changes you suggested and it worked. The modified base was considered as t. Now another doubt is I have to run these calculations for multiple PDB files at a time. I guess analyze option is overwriting the file names wehn I am trying to run in for loop and I could not find any option to give the output file name after analyze command. 

Thanks,
Tanashree

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University