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Messages - xzhang32

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General discussions (Q&As) / Base Stacking analysis
« on: May 02, 2012, 10:40:51 am »
Hi Xiang-Jun and other 3DNA users,

I am wondering does 3DNA support base stacking analysis. To be more specific, say I have a pdb file, can I analyze two defined bases to see whether they are stacking to each other or not? If yes, could you please tell me how. This tool might help me a lot on my trajectory analysis for a RNA simulation.

Thanks.

Ju

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Funded by X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids (R24GM153869)

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University