Messages

1

RNA structures (DSSR) / Re: overlapping area calculation - stacking interactions

« on: August 25, 2026, 07:02:21 am »

Dear Xiang-Jun,
Recently, we have noticed that when using the 3DNA server and uploading a PDB file directly from a computer, the output does not include the overlapping area calculation. However, when a PDB code is entered instead, the output does contain this calculation.

Could you please check this issue and, if possible, restore this functionality for uploaded files?

Thank you very much,
Agnieszka

2

RNA structures (DSSR) / Re: overlapping area calculation - stacking interactions

« on: June 08, 2026, 01:25:39 pm »

Dear Xiang-Jun,
Thank you very much! I appreciate your help. I have already check how it looks for my reference structure and it is perfect.
Best regards,
Aga

3

RNA structures (DSSR) / Re: overlapping area calculation - stacking interactions

« on: June 03, 2026, 12:42:34 pm »

Yes, please. That would be convenient to have it as downloadable wDSSR file.
Thank you,
Agnieszka

4

RNA structures (DSSR) / overlapping area calculation - stacking interactions

« on: June 03, 2026, 08:29:21 am »

Hi,

I used new online xdna-dssr server and got calculated parmeters. However I can't see anymore the calculation of overlapping area as used to be in older version which I liked it very much. Is this option still available?

Agnieszka