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General discussions (Q&As) / Unknown residue DC
« on: September 13, 2008, 01:19:44 am »
Dear All,
I was trying to run the find_pair program to produce *.inp file. But I am encountering the following error.
unknown residue DC 1 on chain A [#1]
Check the base and add one more item in file <baselist.dat>
I was executing the command find_pair -t 123D.pdb 123D.inp . It has all the normal base pairs. I have also checked the BASEPAIR.dat file. If I add the following lines in that file, then the program works fine.
DA A
DC C
DG G
DT T
These are normal base pairs, So I thought I do not have to modify the file. I have ~500 PDB files and all of them have similar problem.
I want to ask from you whether what I am doing is right or not by modifying the basepair.dat file or perhaps I am missing something.
Eagerly awaiting your reply.
Thanks & regards,
Alok Jain
I was trying to run the find_pair program to produce *.inp file. But I am encountering the following error.
unknown residue DC 1 on chain A [#1]
Check the base and add one more item in file <baselist.dat>
I was executing the command find_pair -t 123D.pdb 123D.inp . It has all the normal base pairs. I have also checked the BASEPAIR.dat file. If I add the following lines in that file, then the program works fine.
DA A
DC C
DG G
DT T
These are normal base pairs, So I thought I do not have to modify the file. I have ~500 PDB files and all of them have similar problem.
I want to ask from you whether what I am doing is right or not by modifying the basepair.dat file or perhaps I am missing something.
Eagerly awaiting your reply.
Thanks & regards,
Alok Jain