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Messages - nirtonik

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It is working, thank you so much!


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Hello Dr. Xiang‑Jun Lu and 3DNA community,

I’m using DSSR v2.5.4 on PDB 1EHZ and need to reproduce DSSR’s base‑reference frames in my own Python code. To do this, I require the classic X3DNA v2.4 “atomic.base” template file (found in config/atomic.base of the full C‑source distribution) so I can align the standard guanine (2MG) template to my observed atom coordinates.

On the download page I see the entries:

  3DNA v2.4.8‑2023nov10; the classic X3DNA suite… 
  • Linux 64‑bit (including C source code) 
  • macOS M2 (including C source code) 
  • C source code 

-but every link appears broken (“cannot reach this page”) and I cannot download the archive.
Without config/atomic.base I cannot extract the G/2MG template coordinates needed
Could someone please:

1. Provide a working download link for the X3DNA v2.4 C‑source package,

Thank you very much for your help!

- Arman Alborzi 


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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University