Problem while converting .Pdb file into .Out file

[Anju Sharma]

Hello Sir,
I have converted my .Pdb files into .Out files bt problem now m facing is wth .Out files. Now while carrying out the analysis work m facing a major problem. The DNA sequences i have given (present in .PDB files) and the one in . Out files are different. Example if in .Pdb file sequence is CGATCG thn in .Out file m getting CGATCC, also in many (almost all) if in .Pdb files there are 6 residues thn in .Out files m gettng either 4 or 3. how it is possble when the sequence is same then in some .Out files its showng jst 3 residues and in some 4 nd lk wise.

Waiting for early response, coz all work is at halt.

regards,

Anju Sharma

[xiangjun]

I do not know if I understand exactly what you mean. Why not post a specific (minimal) sample case to illustrate your point?

Also, I find it hard to read a sentence such as "its showng jst 3 residues and in some 4 nd lk wise." -- Maybe that's because English is not my native language? In some sense,   this post might help.

Thanks,

Xiang-Jun