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Author Topic: Generating PDB file  (Read 284 times)

Offline Shreya Ghosh

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Generating PDB file
« on: April 18, 2020, 07:29:47 pm »
After creating a .par file, I tried to create a pdb.

I used the BuildNucleicAcids.py function and mentioned the DNA type and other details. It generated a pdb file without the DNA backbone atoms (attached image).

Could you please let me know how to generate a proper pdb file with the appropriate DNA backbone atoms?

Offline xiangjun

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Re: Generating PDB file
« Reply #1 on: April 18, 2020, 08:53:55 pm »
Quote
I used the BuildNucleicAcids.py function and mentioned the DNA type and other details. It generated a pdb file without the DNA backbone atoms (attached image).

"BuildNucleicAcids.py" is not part of 3DNA. Please ask the author of the program for support.

Xiang-Jun
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.