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Author Topic: Generating PDB file  (Read 20925 times)

Offline Shreya Ghosh

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Generating PDB file
« on: April 18, 2020, 07:29:47 pm »
After creating a .par file, I tried to create a pdb.

I used the BuildNucleicAcids.py function and mentioned the DNA type and other details. It generated a pdb file without the DNA backbone atoms (attached image).

Could you please let me know how to generate a proper pdb file with the appropriate DNA backbone atoms?
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Offline xiangjun

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Re: Generating PDB file
« Reply #1 on: April 18, 2020, 08:53:55 pm »
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I used the BuildNucleicAcids.py function and mentioned the DNA type and other details. It generated a pdb file without the DNA backbone atoms (attached image).

"BuildNucleicAcids.py" is not part of 3DNA. Please ask the author of the program for support.

Xiang-Jun
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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University