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Author Topic: Binary for Mac 10.5.8 (2 x 2.8 Quad-Core Intel Xeon)  (Read 2094 times)

Offline ilibarra

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Binary for Mac 10.5.8 (2 x 2.8 Quad-Core Intel Xeon)
« on: March 14, 2014, 03:26:46 pm »
I have installed 3DNA in a Mac 10.5.8 (2 x 2.8 Quad-Core Intel Xeon)

I have checked the environment variables. They are OK.

bolt:bin ignacio$ echo $X3DNA
/Users/ignacio/Software/x3dna-v2.1
bolt:bin ignacio$ echo $PATH
/Users/ignacio/Software/x3dna-v2.1/bin

However, when executing the test script (or any), I got the following error:

bolt:bin ignacio$ ./find_pair -h
dyld: unknown required load command 0x80000022
Trace/BPT trap
bolt:bin ignacio$ ./mutate_bases
dyld: unknown required load command 0x80000022
Trace/BPT trap

I would like to ask a version of 3DNA for this architecture. If the error was reported somewhere else in this site (I did not find it at the moment) I would like to be referred to the post.

Thanks in advance,

Ignacio Ibarra

Offline xiangjun

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Re: Binary for Mac 10.5.8 (2 x 2.8 Quad-Core Intel Xeon)
« Reply #1 on: March 14, 2014, 04:11:15 pm »
Quote
I have installed 3DNA in a Mac 10.5.8 (2 x 2.8 Quad-Core Intel Xeon)
...
I would like to ask a version of 3DNA for this architecture.

Unfortunately, I do not have access to a Mac 10.5 x86 machine. The current 3DNA v2.1 release for Mac was compiled on OS X 10.6. Did you try the Mac OS X version of 3DNA v2.0? That distribution which was compiled around 2008, and it is very likely to work for you.

Don't you have any access to a newer Mac OS X (10.6+), or Linux? Would it be possible to install a virtual machine (e.g. VirtualBox) on your Mac 10.5.8 to run Linux?

HTH,

Xiang-Jun

Note added on Monday, March 17, 2014: You may also consider to upgrade 10.5.8 (Leopard) to 10.6.8 (Snow Leopard) which costs only $19.99, see https://discussions.apple.com/message/23698405. After all, Mac OS X 10.5.8 (Leopard) is no longer supported by Apple.
« Last Edit: March 17, 2014, 11:38:09 am by xiangjun »
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

Offline ilibarra

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Re: Binary for Mac 10.5.8 (2 x 2.8 Quad-Core Intel Xeon)
« Reply #2 on: March 19, 2014, 12:38:44 am »
Thanks for the time and the answer. It has helped me.

I have compiled v2.0 without problems before writing this post. However, the function I am interested is "mutate_bases". I am concerned it is available for easier use since v2.1.
http://forum.x3dna.org/programs/mutate_bases/

I will run a virtual machine or run mutate_bases with v2.1 somewhere else. I have no problems with this, but I wanted primarily to do everything in the same computer.

 

Created and maintained by Dr. Xiang-Jun Lu[律祥俊]· Supported by the NIH grant R01GM096889 · Dr. Lu is currently a member of the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University. The project is in collabration with the Olson Laborarory at Rutgers where 3DNA got started.