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Questions and answers => w3DNA -- web interface to 3DNA => Topic started by: cllawson on August 08, 2019, 12:12:22 pm

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Title: w3dna server update schedule?
Post by: cllawson on August 08, 2019, 12:12:22 pm
Hi Xiang-Jun,

I notice that ids for more recently released entries yield the following message from the w3DNA server: Empty or invalid ID, please type in a valid one.  (example: http://www.rcsb.org/structure/6I84).
So I'm wondering:
(1) how often the server is updated?
(2) since you can already analyze uploaded structures on the fly have you thought about enabling option to pull/analyze coordinates for newer PDB entries?

Thanks, Cathy
Title: Re: w3dna server update schedule?
Post by: xiangjun on August 08, 2019, 12:28:47 pm
Hi Cathy,

Good catch!

It is in the to-do list to automatically handle newer PDB entries than the initially processed dataset dated March 6, 2019 (reported in the Web 3DNA 2.0 paper). I chatted with Shuxiang about this feature a while ago. Hopefully, the server will be updated in the near future with the functionality.

Best regards,

Xiang-Jun
Title: Re: w3dna server update schedule?
Post by: cllawson on August 09, 2019, 07:42:31 am
Thanks -- that is good news!

Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.