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Author Topic: Can 3DNA generate PDB files of DNA containing G-T mismatch?  (Read 51 times)

Offline Doris

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Can 3DNA generate PDB files of DNA containing G-T mismatch?
« on: December 05, 2018, 12:56:31 am »
Hi Xiang,
I try to generate a PDB file using double strand DNA sequence, but the G-T base pair is converted into A-T base pair automatically when I use w3DNA.
May you please guide me that how can I convert the DNA helix contained GT base pair to PDB files?
Thank you ;) .

Offline xiangjun

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Re: Can 3DNA generate PDB files of DNA containing G-T mismatch?
« Reply #1 on: December 05, 2018, 09:27:30 am »
Hi Doris,

Please be specific with your question so others can reproduce it.

What URL did you use for w3DNA? What feature did you try, with what sequence (parameters), and got what result (PDB file)?

Best regards,

Xiang-Jun
« Last Edit: December 05, 2018, 09:29:24 am by xiangjun »
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.