Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers
Miscellaneous items > Users' contributions
3DNA parser
(1/1)
yrxin:
Hi,
I wrote a python package to parse PDB and 3DNA output files.
Briefly speaking of this package, it reads PDB files to get structure information, such as atom, residue. It then reads output files generated by "find_pair -p" and "find_pair | analyze" to get base-pairing, base-stacking, and helical information. I have a "manual" folder showing a couple of examples.
Any kind of comments are welcome.
Yurong
Navigation
[0] Message Index
Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.