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Questions and answers => RNA structures (DSSR) => Topic started by: jimamoto on February 28, 2020, 06:02:57 pm

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Title: Running 1ehz example: issue .ntParams
Post by: jimamoto on February 28, 2020, 06:02:57 pm
Hello,
I am exploring the functions of dssr.  However, when I try the 1ehz example on pg.61 of the manual the following command jq .ntParams 1ehz-dssr.json fails and only produces “null”.  All the other commands seem to work just fine, except the ones that include .ntParams.  I expect that something is going wrong, but I am unsure of where to begin to solve the issue.  Any guidance will be greatly appreciated.

Jason
Title: Re: Running 1ehz example: issue .ntParams
Post by: xiangjun on February 28, 2020, 06:47:17 pm
Hi Jason,

Good catch! The key ntParams in the DSSR JSON output was changed to nts a long time ago. However, the manual has not been updated accordingly. That's why you got the "null" output since the JSON file does not contain any objects named ntParams.

Simply replace .ntParams by .nts in the commands listing would resolve the issue. The DSSR Manual has now been corrected.

Best regards,

Xiang-Jun

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.