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Processing file '1FFK.pdb1' [1FFK]
total number of base pairs: 1406
total number of multiplets: 219
total number of helices: 104
total number of stems: 175
total number of hairpin loops: 66
total number of bulges: 34
total number of internal loops: 63
total number of junctions: 31
total number of non-pairing interactions: 2288
total number of non-loop single-stranded segments: 47
total number of kissing loops: 1
total number of A-minor (type I and II) motifs: 93
total number of ribose zippers: 41 (237)
total number of kink turns: 6
total number of phosphate interactions: 641
x3dna-dssr -i=1FFK.pdb1 -o=1FFK.out1 -note -more -non-pair -u-turn -po4 -break-symbol -long-idstr
and x3dna-dssr -i=1FFK.pdb1 -o=1FFK.out1 -u-turn
,results are identical.Processing file '1ffk.pdb' [1ffk]
total number of base pairs: 1406
total number of multiplets: 219
total number of helices: 104
total number of stems: 175
total number of hairpin loops: 66
total number of bulges: 35
total number of internal loops: 66
total number of junctions: 33
total number of pseudo-knots: 22
total number of non-loop single-stranded segments: 32
total number of kissing loops: 1
total number of A-minor (type I and II) motifs: 93
total number of U-turns: 28
total number of ribose zippers: 41 (237)
total number of kink turns: 6
Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.