Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

Author Topic: dssr issue (for modified pdb files)  (Read 8816 times)

Offline auffinger

  • with-posts
  • *
  • Posts: 108
    • View Profile
dssr issue (for modified pdb files)
« on: September 03, 2013, 06:27:38 am »
Hi Xiang-Jun,

Just encountered following dssr (latest august release)

*** glibc detected *** x3dna-dssr: corrupted double-linked list: 0x000000000227cc50 ***

when using following file : 3CUL_REDO.py.pdb

this file is not an original pdb file, any idea where the error can come from ?
This file is not the only one but the occurrence of such errors is quite rare.

Thanks,

Pascal
pascal auffinger
ibmc-cnrs
15, rue rené descartes
67084 strasbourg cedex
france

web sites:
http://www-ibmc.u-strasbg.fr/arn/Westho ... er_pub.HTM
http://www-ibmc.u-

Offline xiangjun

  • Administrator
  • with-posts
  • *****
  • Posts: 1640
    • View Profile
    • 3DNA homepage
Re: dssr issue (for modified pdb files)
« Reply #1 on: September 03, 2013, 11:40:59 am »
Hi Pascal,

Thanks for reporting the bug, and supplying an example PDB file. I have traced and fixed the 'rare' error and released an updated version of DSSR. Please have a try of beta-r21-on-20130903 and report back any issues you may still have.

Best regards, and enjoy DSSR!

Xiang-Jun

Offline auffinger

  • with-posts
  • *
  • Posts: 108
    • View Profile
Re: dssr issue (for modified pdb files)
« Reply #2 on: September 04, 2013, 09:16:51 am »
Thanks, works fine for this file.

Best,

Pascal
pascal auffinger
ibmc-cnrs
15, rue rené descartes
67084 strasbourg cedex
france

web sites:
http://www-ibmc.u-strasbg.fr/arn/Westho ... er_pub.HTM
http://www-ibmc.u-

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.