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Questions and answers => RNA structures (DSSR) => Topic started by: auffinger on September 03, 2013, 06:27:38 am

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Title: dssr issue (for modified pdb files)
Post by: auffinger on September 03, 2013, 06:27:38 am

Hi Xiang-Jun,

Just encountered following dssr (latest august release)

*** glibc detected *** x3dna-dssr: corrupted double-linked list: 0x000000000227cc50 ***

when using following file : 3CUL_REDO.py.pdb

this file is not an original pdb file, any idea where the error can come from ?
This file is not the only one but the occurrence of such errors is quite rare.

Thanks,

Pascal

Title: Re: dssr issue (for modified pdb files)
Post by: xiangjun on September 03, 2013, 11:40:59 am

Hi Pascal,

Thanks for reporting the bug, and supplying an example PDB file. I have traced and fixed the 'rare' error and released an updated version of DSSR. Please have a try of beta-r21-on-20130903 and report back any issues you may still have.

Best regards, and enjoy DSSR!

Xiang-Jun

Title: Re: dssr issue (for modified pdb files)
Post by: auffinger on September 04, 2013, 09:16:51 am

Thanks, works fine for this file.

Best,

Pascal

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.