RNA structures (DSSR)

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Subject / Started by	Replies / Views	Last post
Creation of customized structures using DSSR Started by curiousphoton	6 Replies 6704 Views	October 12, 2023, 11:11:25 am by xiangjun
Analysis of trajectory from Molecular Dynamics Started by shvelarde	3 Replies 6706 Views	July 08, 2020, 02:55:19 pm by xiangjun
Calculate base step parameters manually Started by m.bruist	1 Replies 6831 Views	February 22, 2020, 06:52:57 pm by xiangjun
3DNA-DSSR Started by aathithya	3 Replies 6966 Views	February 19, 2021, 12:26:56 am by xiangjun
Identification of Basepairs - Vertical Seperation Started by Tom Mülller	1 Replies 7062 Views	May 15, 2020, 10:10:12 am by xiangjun
strange sequence and dot-bracket notation for dssr output Started by shuxiang	2 Replies 7077 Views	June 21, 2019, 03:31:57 pm by shuxiang
How to detect very distorted base pair? Started by lvelve0901	4 Replies 7153 Views	September 13, 2020, 01:34:34 pm by xiangjun
dssr stdin Started by zcx	3 Replies 7168 Views	June 08, 2020, 03:51:39 pm by zcx
[Solved] Batch-processing structures with analyze -t Started by persalteas	3 Replies 7187 Views	January 06, 2020, 08:23:13 pm by xiangjun
composite DNA template length Started by miaobeibei925	2 Replies 7189 Views	February 11, 2021, 04:46:42 pm by xiangjun
Figure 5. Molecular images illustrating hydrogen bonds (dashed lines) shared Started by shuxiang	1 Replies 7306 Views	June 14, 2019, 03:55:57 pm by shuxiang
Circular DNA parameters Started by heesch	3 Replies 7464 Views	April 14, 2021, 06:23:14 am by heesch
Stacking parameters (again) Started by spoblete	1 Replies 7493 Views	August 27, 2019, 10:31:45 pm by xiangjun
Problem using --pair-list options Started by angel	4 Replies 7758 Views	February 14, 2020, 10:30:52 am by xiangjun
Analyzing more than 900 RNA structures Started by zainab fadhil	1 Replies 7821 Views	December 19, 2016, 09:56:24 pm by xiangjun
Documentation of the Json output fields ? Started by persalteas	3 Replies 7824 Views	March 13, 2020, 09:24:28 am by xiangjun
Identify sugar type in the DSSR output Started by brinda.vallat	3 Replies 7847 Views	April 24, 2020, 11:11:04 am by brinda.vallat
automatically count the number of nucleotides involved in RNA helices Started by elodiem	3 Replies 7921 Views	July 27, 2018, 09:23:28 am by xiangjun
how to define base pair and co-stacking Started by chenjief	1 Replies 7951 Views	August 01, 2019, 11:56:33 am by xiangjun
MOVED: Dinucleotide step parameters for "ideal" A-form RNA Started by xiangjun	0 Replies 8148 Views	September 11, 2015, 03:52:08 pm by xiangjun

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.

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