RNA structures (DSSR)

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Subject / Started by	Replies / Views	Last post
composite DNA template length Started by miaobeibei925	2 Replies 7030 Views	February 11, 2021, 04:46:42 pm by xiangjun
[Solved] Batch-processing structures with analyze -t Started by persalteas	3 Replies 7030 Views	January 06, 2020, 08:23:13 pm by xiangjun
dssr stdin Started by zcx	3 Replies 7005 Views	June 08, 2020, 03:51:39 pm by zcx
How to detect very distorted base pair? Started by lvelve0901	4 Replies 6988 Views	September 13, 2020, 01:34:34 pm by xiangjun
strange sequence and dot-bracket notation for dssr output Started by shuxiang	2 Replies 6929 Views	June 21, 2019, 03:31:57 pm by shuxiang
Identification of Basepairs - Vertical Seperation Started by Tom Mülller	1 Replies 6907 Views	May 15, 2020, 10:10:12 am by xiangjun
3DNA-DSSR Started by aathithya	3 Replies 6795 Views	February 19, 2021, 12:26:56 am by xiangjun
Calculate base step parameters manually Started by m.bruist	1 Replies 6686 Views	February 22, 2020, 06:52:57 pm by xiangjun
Analysis of trajectory from Molecular Dynamics Started by shvelarde	3 Replies 6550 Views	July 08, 2020, 02:55:19 pm by xiangjun
Materials related to the DSSR ACS Biochemistry article on G.A pairs Started by xiangjun	0 Replies 6540 Views	June 07, 2019, 02:48:29 pm by xiangjun
nt_ids for residues i+1 and i-1 Started by brinda.vallat	3 Replies 6494 Views	February 24, 2021, 11:57:13 am by xiangjun
SASA of nucleobases Started by Mohit Chawla	3 Replies 6487 Views	February 06, 2020, 04:56:32 pm by xiangjun
Query in 3DNA-DSSR output vs W3DNA output Started by sankaran	1 Replies 6487 Views	February 28, 2021, 10:22:26 am by xiangjun
torsion angle distribution in C2'-endo RNA Started by zhhxu	4 Replies 6483 Views	June 29, 2020, 10:56:30 am by zhhxu
Running 1ehz example: issue .ntParams Started by jimamoto	1 Replies 6449 Views	February 28, 2020, 06:47:17 pm by xiangjun
Figure 3. Scatter plots of the rigid-body components—shear, stretch, and opening Started by shuxiang	1 Replies 6361 Views	June 10, 2019, 01:24:06 pm by shuxiang
wDSSR showing invalid ID on a valid PDB ID Started by kalra.utkarsh	1 Replies 6357 Views	November 07, 2020, 09:31:40 am by xiangjun
Figure 4. Succession of configurations illustrating the rigid-body motions Started by shuxiang	1 Replies 6352 Views	June 14, 2019, 03:11:58 pm by shuxiang
Creation of customized structures using DSSR Started by curiousphoton	6 Replies 6301 Views	October 12, 2023, 11:11:25 am by xiangjun
x3dna-dssr -h no response Started by rvandamm	1 Replies 6115 Views	January 15, 2021, 09:53:57 pm by xiangjun

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.

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