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RNA structures (DSSR) / How does 3dna-dssr convert the atomic coordinates from PDB files into its output
« Last post by junkaiWang on February 01, 2024, 07:21:19 am »Hi Xiangjun,
I encountered an issue while analyzing RNA structures using the 3dna-dssr program: I noticed that the XYZ coordinates of atoms such as base C5' in the output results are not consistent with those in the PDB file, indicating that some transformation has been applied. I found that there seems to be a relative coordinate system between base pairs in the output file, and I attempted to use it for conversion, but the results did not meet my expectations. Could you please clarify how the coordinates in the PDB file are transformed into the format used in the program's output?
I encountered an issue while analyzing RNA structures using the 3dna-dssr program: I noticed that the XYZ coordinates of atoms such as base C5' in the output results are not consistent with those in the PDB file, indicating that some transformation has been applied. I found that there seems to be a relative coordinate system between base pairs in the output file, and I attempted to use it for conversion, but the results did not meet my expectations. Could you please clarify how the coordinates in the PDB file are transformed into the format used in the program's output?