Topics

1

General discussions (Q&As) / No Output File Created

« on: February 07, 2017, 02:39:14 pm »

Dear Dr. Lu,

For the PDB file 4YLN, a bps file can be made, however, an output file that analyzes the bps file can not be created.

The error message reads:
residue serial number 1144911546 or 0 <= 0

Are there some modifications that need to be done to the bps file before it can be analyzed? How can an output file for 4YLN be created?

Thanks,
Ashay

2

General discussions (Q&As) / Reading the BPS File

« on: February 07, 2017, 02:34:45 pm »

Hi Dr. Lu,

When reading the BPS file, what do each of the five numbers on rightmost side represent?

1   24  0 #    1 | ....>A:...1_:[.DC]C-----G[.DG]:..24_:B<....  0.50  0.06 14.47  8.89 -3.65
2   23  0 #    2 | ....>A:...2_:[.DG]G-----C[.DC]:..23_:B<....  0.37  0.25 11.73  8.90 -3.55

In the case of 1BNA and the resulting 1BNA.bps file, the numbers read: 0.50  0.06 14.47  8.89 -3.65
 
Thanks,

Ashay