Show Posts

This section allows you to view all posts made by this member. Note that you can only see posts made in areas you currently have access to.


Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

Topics - drknnetz

Pages: [1]
1
MD simulations / A-Form B-Form RNA/DNA
« on: August 12, 2015, 05:23:29 pm »
Does anyone know where to find the specifics as to how x3dna paramaterizes whether the RNA is in A form and the DNA is in B form? What coordinates does it use in the DNA molecule or RNA molecule?

2
Feature requests / Trajectory over time
« on: August 11, 2015, 02:43:31 pm »
Hello all, I am brand new to using dssr and x3DNA. I started yesterday and it seems like a pretty awesome download so thanks for creating this! I was wondering if there is anything in the works for analyzing an entire trajectory? I know this current dssr analyzes pdb files and not an mdcrd file so I'm sure there is a lot more that goes into it. I was just wondering if there was anything in the works.
Thanks,
Dennis

Pages: [1]

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.