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DNA/RNA-protein interactions (SNAP) / What are the Tdst and Rdst meaning?
« on: July 26, 2019, 03:18:55 pm »
Hi Xiang-Jun,
I used snap to calculate the interactions between RNA and proteins and a partial output likes this:
id nt-aa nt aa Tdst Rdst Tx Ty Tz Rx Ry Rz
1 2ZJP A-lys X.A5 G.LYS162 7.87 62.37 -7.80 0.04 -1.04 53.25 26.79 19.25
Wilma and I are wondering that the meanings of Tdst and Rdst (We guess they are transnational distance and Rotational distance). But why these distances can be negative values?
Thank you.
Best,
Shuxiang
I used snap to calculate the interactions between RNA and proteins and a partial output likes this:
id nt-aa nt aa Tdst Rdst Tx Ty Tz Rx Ry Rz
1 2ZJP A-lys X.A5 G.LYS162 7.87 62.37 -7.80 0.04 -1.04 53.25 26.79 19.25
Wilma and I are wondering that the meanings of Tdst and Rdst (We guess they are transnational distance and Rotational distance). But why these distances can be negative values?
Thank you.
Best,
Shuxiang