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Messages - miaozhichao

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DNA/RNA-protein interactions (SNAP) / Detection of stacking interactions
« on: August 10, 2015, 03:37:51 am »
Hi Xiangjun,
It was very convenient using SNAP. I am wondering if you have function in detecting aromatic stacking between protein and NA? I need this function for my current job. Can you help me?

Best
Zhichao.

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Hi Xiangjun,
 What great news! I did not find this update previously.
 I am recently considering some specificity related interactions. And I think your SNAP could be perfect in analyzing the structures and use as standard.
I will definitely try it in my new project. I will let you know my results.

Thank you very much!

Zhichao.

3
Hi Xiangjun,
I hope you are doing well!
I just found you have such good program.
I also would like to analyze protein-NA interactions.
And the same question: When will the protein-RNA part be available.
I think the H-bond part is very helpful for analyzing the specificity, which is what I want to know.

Best
Zhichao.

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.