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Messages - Z3DNA2012

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w3DNA -- web interface to 3DNA / Re: Missing atoms
« on: March 13, 2012, 09:03:51 pm »
Dear Xiang-Jun,

That is nice update, good for all users. We appreciate your efforts very much. 

Best regards,

Xiao-Ping

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w3DNA -- web interface to 3DNA / Re: Missing atoms
« on: March 13, 2012, 04:56:22 pm »
Dear Xiang-Jun,

Swiss Pdb Viewer (4.0.4) is happy with the file fb-pdbv3.pdb. Thank you very much. Sorry for the late reply.

Xiao-Ping

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w3DNA -- web interface to 3DNA / Re: Missing atoms
« on: March 08, 2012, 05:27:09 pm »
Dear Xiang-Jun,

The attached file is the message from Swiss pdb Viewer when open fb-new.pdb.

Thank you.

Xiao-Ping

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w3DNA -- web interface to 3DNA / Re: Missing atoms
« on: March 08, 2012, 05:10:42 pm »
Dear Xiang-Jun,

Thank you for your prompt reply. The two files linked to the message have the same name. Here I attach the message from Swiss pdb viewer when it open fb-raw.pdb. Could you please link the fb-new.pdb. I have not installed 3DNA locally yet.

Thank you for your help.

Xiao-Ping

5
w3DNA -- web interface to 3DNA / Missing atoms
« on: March 08, 2012, 04:09:44 pm »
Dear Xiang-Jun,

Thank you for your 3DNA software and the 3DNA Webservice.
I generated a dsDNA fragment (18-mer) through your 3DNA Webserver. When I open the file with Swiss Pdb Viewer, I got a long list complaining missing atoms. I think that the atoms are there, but they have different names which Swiss Pdb Viewer can not recognize. Is there an easy way to fix this?

Thank you.

Xiao-Ping

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.