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Messages - feix
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1
« on: July 24, 2008, 12:35:12 pm »
Hi! Xiangjun:
Thanks! I changed the setting of misc_3dna.par so that 3dna does not recognize the step 57 as a breakage of helices. Everything works fine now.
Best,
Fei
2
« on: July 23, 2008, 10:54:49 am »
HI! Xiangjun:
I can't get the values of step parameters of step 57 in the pdb file attached here (2f8n.pdb). I checked the 3D-structure. The base pair 58 (58 G and 233 C) in dimer step 57 is a funny base pair, whose Propeller is -60 degree ( I attach a picture of step 57). I guess, 3DNA might put some constrains to base pairs so that I can't get the value of step parameters of step 57. How can I avoid the constrains and get the values of the step parameters
Thanks!
Best,
Fei
3
« on: September 29, 2006, 01:53:02 pm »
HI! Xiangjun:
In which file among the 3DNA output files can I find the center of a dimer step?
Thanks a lot!
Fei
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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids
Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University