Messages

1

RNA structures (DSSR) / Re: torsion angle distribution in C2'-endo RNA

« on: June 29, 2020, 10:56:30 am »

Hi Xiang-Jun,

Sorry for the delay in replying. It is convenient to use DSSR to charcterize the structural feature of C2'-endo RNA. Thanks for your suggestion.

Best regards


Zhonghe

2

RNA structures (DSSR) / Re: torsion angle distribution in C2'-endo RNA

« on: June 25, 2020, 11:28:56 pm »

Hi Xiang-Jun,

Thanks for your prompt reply. I also found some relevant works (JANE S. RICHARDSON) about torsion angle in C2'-endo RNA, including: "RNA backbone is rotameric" , “RNA backbone: Consensus all-angle conformers and modular string nomenclature", and  "Computational methods for RNA structure validation and improvement".  Thanks again for your suggestion.

Best regards,

Zhonghe

3

RNA structures (DSSR) / torsion angle distribution in C2'-endo RNA

« on: June 25, 2020, 10:43:06 am »

Hi everyone:

RNA can adpot two sugar-pucker comformations: C3'-endo and C2'-endo. The latter is lower popolation weight. Have someone noticed any reference about statistical analysis of the torsion angle (i.e alpha-zeta) for C2'-endo RNA. Thank you in advance.

Best regards

zhonghe