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MD simulations
Topics
[1] Base pair number not staying constant in simulations
[2] Do I need gromacs to use dnaMD for simulations?
[3] Update of do_x3dna package
[5] Gromacs missing ' P ' atom
[6] generate DNA pdb file for Gromacs
[8] Superimpose representative cluster of a RNA strand after simulation
[9] Unnatural base pair helical parameters
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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids
Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University