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MD simulations

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[1] Base pair number not staying constant in simulations

[2] Do I need gromacs to use dnaMD for simulations?

[3] Update of do_x3dna package

[4] overwritten output files

[5] Gromacs missing ' P ' atom

[6] generate DNA pdb file for Gromacs

[7] DNA step parameters

[8] Superimpose representative cluster of a RNA strand after simulation

[9] Unnatural base pair helical parameters

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University

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