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MD simulations
Topics
[1] Analysis of PDB file:query
[2] How to properly use x3dna_ensemble?
[4] Interpretation of Analysis data from 3DNA
[5] H-bonding information in MD analysis output
[6] Issues related to 3DNA and the MD Ruby scripts set up
[7] Ruby scripts / where is output file?
[8] average values from MD simulations
[9] Snapshots must be separated by MODEL/ENDMDL
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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.