MD simulations

Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

Pages: 1 [2] 3 Go Down

Subject / Started by	Replies / Views	Last post
Analysis of PDB file:query Started by souviksur	5 Replies 13896 Views	April 19, 2012, 12:18:08 pm by xiangjun
analyzing longer DNA sequences Started by shynomat	5 Replies 11185 Views	November 21, 2012, 11:05:56 am by xiangjun
3dna.pl - A Perl Script for Parsing 3DNA Output Started by slaw	5 Replies 12706 Views	February 10, 2011, 10:29:25 pm by xiangjun
average values from MD simulations Started by ara	4 Replies 9948 Views	March 20, 2011, 10:50:35 am by xiangjun
A-Form B-Form RNA/DNA Started by drknnetz	4 Replies 17744 Views	March 23, 2017, 10:44:59 am by xiangjun
How is the helix axis calculated in 3DNA Started by wwang02	4 Replies 10043 Views	September 29, 2014, 11:33:18 pm by wwang02
Analysis of Amber .mdcrd File Started by rwmolt	3 Replies 16244 Views	June 15, 2017, 12:07:32 pm by xiangjun
How to fix the phosphate on the DNA backbone Started by tpc2005	3 Replies 11271 Views	November 20, 2016, 03:31:26 am by tpc2005
"Ruby in cygwin" Started by bciezah1	3 Replies 15228 Views	April 06, 2017, 10:59:33 am by bciezah1
the sign of minor or major groove width Started by shahabshariati	3 Replies 9604 Views	February 10, 2011, 10:06:26 pm by xiangjun
do_x3dna as a plugin for VMD and update in dnaMD Started by Rajendra Kumar	3 Replies 16641 Views	May 27, 2019, 12:16:26 pm by xiangjun
Filter frayed ends or broken H bonds Started by RAHULRAH	3 Replies 18186 Views	October 11, 2019, 08:54:11 am by xiangjun
Using find_pair Started by jdap1989	3 Replies 9164 Views	September 18, 2012, 11:33:25 pm by xiangjun
Average or Global properties from a simulation Started by metoo	2 Replies 12784 Views	March 24, 2017, 07:45:55 am by metoo
DNA screwing into protein Started by vito_genna	2 Replies 9967 Views	October 14, 2013, 08:42:15 am by vito_genna
pdb files created using v 1.5 and v 2.1 beta Started by shynomat	2 Replies 8225 Views	May 29, 2012, 09:03:44 pm by xiangjun
About output files from x3dna_md.rb Started by Pablo Ricardo Arantes	2 Replies 10045 Views	September 07, 2012, 10:07:09 pm by Pablo Ricardo Arantes
How to generate a Methylated DNA pdb file from sequence to be use in MD Started by bciezah1	2 Replies 15388 Views	June 23, 2017, 10:52:57 am by bciezah1
No matching entry in atomlist.dat Started by shynomat	2 Replies 8378 Views	May 02, 2012, 01:42:02 pm by shynomat
generate DNA pdb file for Gromacs Started by dailiang	2 Replies 25098 Views	October 27, 2021, 01:00:46 pm by dnalectronics

Pages: 1 [2] 3 Go Up

Normal Topic
Hot Topic (More than 25 replies)
Very Hot Topic (More than 35 replies)

Locked Topic
Sticky Topic

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.

News: