Hello,
I was trying to use X3DNA to calculate some helix parameter in a DNA duplex in which a base
(dG) is not
paired to its opposite base (I removed the dC base form my model). I can not generate
the .inp file from my
pdb file using find_pair.
This is my sequence:
5'-C1 C2 A3 T4 C5 G6 C7 T8 A9 C10 C11-3'
3-G21 G20 T19 A18 C17 --- G16 A15 T14 G13 G12-5'
when I type find_pair -t iBdnaVacFINAL_x3dna2.pdb iBdnaVacFINAL_x3dna.inp
I get:
...... /usr/local/research/X3DNA/BASEPARS/ ......
...... reading file: misc_3dna.par ......
...... /usr/local/research/X3DNA/BASEPARS/ ......
...... reading file: baselist.dat ......
...... /usr/local/research/X3DNA/BASEPARS/ ......
...... /usr/local/research/X3DNA/BASEPARS/ ......
...... reading file: misc_3dna.par ......
no base-pairs found for this structure
===========================
this is the .inp file generated by the find_pair command:
iBdnaVacFINAL_x3dna2.pdb
iBdnaVacFINAL_x3dna2.out
2 # duplex
0 # number of base-pairs
===========================
More over, my DNA is a DNA adduct with a lesion at G6, but I removed the carcinogen
atomsx from the pdb file
to
make it easier to me and for the programme.
1) How to I fix this?
2) i can try to generate the .inp file manually, but what number should I use to specify the
number of base
pairs, 11 or 10?
UPDATE:
now I created manually a .inp file:
iBdnaVacFINAL_x3dna.pdb
iBdnaVacFINAL_x3dna.out
2 # duplex
10 # number of base-pairs
1 0 #
1 21 0 #
2 20 0
3 19 0
4 18 0
5 17 0
6 1
7 16 0
8 15 0
9 14 0
10 13 0
11 12 0
and the, when I type analyze iBdnaVacFINAL_x3dna.inp
I get this error:
......Processing structure #1: <iBdnaVacFINAL_x3dna.inp>......
...... /usr/local/research/X3DNA/BASEPARS/ ......
...... reading file: misc_3dna.par ......
...... /usr/local/research/X3DNA/BASEPARS/ ......
...... reading file: baselist.dat ......
Non-base: residue C 1 on chain A [#1]
Any help?
Thank you,
fabian.
===================
PDB file
ATOM 1 H5T CYT 1 -273.519 337.365 -7.216 H
ATOM 2 O5' CYT 1 -274.367 337.343 -7.755 O
ATOM 3 C5' CYT 1 -274.072 336.902 -9.099 C
ATOM 4 H5'1 CYT 1 -273.346 337.585 -9.550 H
ATOM 5 H5'2 CYT 1 -273.604 335.913 -9.069 H
ATOM 6 C4' CYT 1 -275.332 336.840 -10.005 C
ATOM 7 H4' CYT 1 -275.023 336.582 -11.023 H
ATOM 8 O4' CYT 1 -276.228 335.803 -9.510 O
ATOM 9 C1' CYT 1 -277.560 336.330 -9.286 C
ATOM 10 H1' CYT 1 -278.132 336.206 -10.215 H
ATOM 11 N1 CYT 1 -278.189 335.614 -8.159 N
ATOM 12 C6 CYT 1 -277.600 335.619 -6.916 C
ATOM 13 H6 CYT 1 -276.659 336.147 -6.779 H
ATOM 14 C5 CYT 1 -278.176 334.955 -5.882 C
ATOM 15 H5 CYT 1 -277.707 334.955 -4.909 H
ATOM 16 C4 CYT 1 -279.389 334.262 -6.146 C
ATOM 17 N4 CYT 1 -280.003 333.571 -5.200 N
ATOM 18 H41 CYT 1 -279.607 333.529 -4.269 H
ATOM 19 H42 CYT 1 -280.883 333.114 -5.453 H
ATOM 20 N3 CYT 1 -279.966 334.233 -7.324 N
ATOM 21 C2 CYT 1 -279.387 334.903 -8.349 C
ATOM 22 O2 CYT 1 -279.962 334.845 -9.419 O
ATOM 23 C3' CYT 1 -276.160 338.148 -10.016 C
ATOM 24 H3' CYT 1 -275.570 339.006 -9.677 H
ATOM 25 C2' CYT 1 -277.328 337.836 -9.069 C
ATOM 26 H2'1 CYT 1 -278.216 338.428 -9.278 H
ATOM 27 H2'2 CYT 1 -277.020 338.044 -8.043 H
ATOM 28 O3' CYT 1 -276.645 338.376 -11.371 O
ATOM 29 P CYT 2 -277.401 339.776 -11.764 P
ATOM 30 O1P CYT 2 -277.065 340.919 -10.840 O
ATOM 31 O2P CYT 2 -277.066 340.175 -13.179 O
ATOM 32 O5' CYT 2 -278.958 339.292 -11.591 O
ATOM 33 C5' CYT 2 -279.557 338.469 -12.632 C
ATOM 34 H5'1 CYT 2 -279.488 338.987 -13.593 H
ATOM 35 H5'2 CYT 2 -279.000 337.532 -12.715 H
ATOM 36 C4' CYT 2 -281.043 338.163 -12.325 C
ATOM 37 H4' CYT 2 -281.451 337.531 -13.119 H
ATOM 38 O4' CYT 2 -281.155 337.445 -11.065 O
ATOM 39 C1' CYT 2 -282.345 337.870 -10.364 C
ATOM 40 H1' CYT 2 -283.207 337.361 -10.816 H
ATOM 41 N1 CYT 2 -282.222 337.556 -8.928 N
ATOM 42 C6 CYT 2 -281.117 337.967 -8.222 C
ATOM 43 H6 CYT 2 -280.362 338.555 -8.730 H
ATOM 44 C5 CYT 2 -280.971 337.626 -6.916 C
ATOM 45 H5 CYT 2 -280.099 337.943 -6.366 H
ATOM 46 C4 CYT 2 -282.007 336.848 -6.330 C
ATOM 47 N4 CYT 2 -281.940 336.466 -5.065 N
ATOM 48 H41 CYT 2 -281.109 336.664 -4.525 H
ATOM 49 H42 CYT 2 -282.693 335.862 -4.726 H
ATOM 50 N3 CYT 2 -283.085 336.465 -6.973 N
ATOM 51 C2 CYT 2 -283.225 336.826 -8.270 C
ATOM 52 O2 CYT 2 -284.258 336.485 -8.813 O
ATOM 53 C3' CYT 2 -281.917 339.434 -12.162 C
ATOM 54 H3' CYT 2 -281.336 340.344 -12.341 H
ATOM 55 C2' CYT 2 -282.417 339.366 -10.708 C
ATOM 56 H2'1 CYT 2 -283.422 339.764 -10.580 H
ATOM 57 H2'2 CYT 2 -281.738 339.941 -10.075 H
ATOM 58 O3' CYT 2 -283.027 339.355 -13.101 O
ATOM 59 P ADE 3 -283.978 340.662 -13.380 P
ATOM 60 O1P ADE 3 -283.304 341.977 -13.080 O
ATOM 61 O2P ADE 3 -284.456 340.669 -14.810 O
ATOM 62 O5' ADE 3 -285.181 340.342 -12.315 O
ATOM 63 C5' ADE 3 -286.146 339.304 -12.639 C
ATOM 64 H5'1 ADE 3 -286.667 339.565 -13.565 H
ATOM 65 H5'2 ADE 3 -285.618 338.361 -12.805 H
ATOM 66 C4' ADE 3 -287.175 339.120 -11.500 C
ATOM 67 H4' ADE 3 -287.860 338.308 -11.763 H
ATOM 68 O4' ADE 3 -286.498 338.761 -10.266 O
ATOM 69 C1' ADE 3 -287.212 339.325 -9.145 C
ATOM 70 H1' ADE 3 -288.096 338.709 -8.930 H
ATOM 71 N9 ADE 3 -286.338 339.374 -7.974 N
ATOM 72 C8 ADE 3 -285.058 339.893 -7.873 C
ATOM 73 H8 ADE 3 -284.670 340.453 -8.726 H
ATOM 74 N7 ADE 3 -284.390 339.636 -6.683 N
ATOM 75 C5 ADE 3 -285.327 338.887 -5.950 C
ATOM 76 C6 ADE 3 -285.364 338.266 -4.679 C
ATOM 77 N6 ADE 3 -284.359 338.253 -3.790 N
ATOM 78 H61 ADE 3 -284.459 337.681 -2.949 H
ATOM 79 H62 ADE 3 -283.466 338.650 -4.061 H
ATOM 80 N1 ADE 3 -286.443 337.612 -4.267 N
ATOM 81 C2 ADE 3 -287.489 337.549 -5.073 C
ATOM 82 H2 ADE 3 -288.347 337.007 -4.697 H
ATOM 83 N3 ADE 3 -287.620 338.064 -6.287 N
ATOM 84 C4 ADE 3 -286.505 338.750 -6.755 C
ATOM 85 C3' ADE 3 -287.982 340.404 -11.173 C
ATOM 86 H3' ADE 3 -287.688 341.236 -11.822 H
ATOM 87 C2' ADE 3 -287.654 340.689 -9.692 C
ATOM 88 H2'1 ADE 3 -288.487 341.105 -9.122 H
ATOM 89 H2'2 ADE 3 -286.824 341.398 -9.646 H
ATOM 90 O3' ADE 3 -289.393 340.109 -11.366 O
ATOM 91 P THY 4 -290.525 341.288 -11.247 P
ATOM 92 O1P THY 4 -289.979 342.679 -11.440 O
ATOM 93 O2P THY 4 -291.643 341.051 -12.230 O
ATOM 94 O5' THY 4 -290.981 341.011 -9.699 O
ATOM 95 C5' THY 4 -291.739 339.805 -9.407 C
ATOM 96 H5'1 THY 4 -292.697 339.836 -9.935 H
ATOM 97 H5'2 THY 4 -291.186 338.934 -9.768 H
ATOM 98 C4' THY 4 -291.982 339.649 -7.890 C
ATOM 99 H4' THY 4 -292.469 338.687 -7.704 H
ATOM 100 O4' THY 4 -290.722 339.665 -7.168 O
ATOM 101 C1' THY 4 -290.958 340.217 -5.854 C
ATOM 102 H1' THY 4 -291.491 339.458 -5.269 H
ATOM 103 N1 THY 4 -289.687 340.598 -5.208 N
ATOM 104 C6 THY 4 -288.811 341.467 -5.836 C
ATOM 105 H6 THY 4 -289.078 341.872 -6.805 H
ATOM 106 C5 THY 4 -287.621 341.797 -5.264 C
ATOM 107 C7 THY 4 -286.699 342.778 -5.967 C
ATOM 108 H71 THY 4 -286.525 343.641 -5.319 H
ATOM 109 H72 THY 4 -285.732 342.310 -6.158 H
ATOM 110 H73 THY 4 -287.122 343.132 -6.908 H
ATOM 111 C4 THY 4 -287.220 341.222 -3.981 C
ATOM 112 O4 THY 4 -286.156 341.392 -3.419 O
ATOM 113 N3 THY 4 -288.169 340.412 -3.402 N
ATOM 114 H3 THY 4 -287.944 340.016 -2.500 H
ATOM 115 C2 THY 4 -289.388 340.072 -3.940 C
ATOM 116 O2 THY 4 -290.135 339.345 -3.315 O
ATOM 117 C3' THY 4 -292.829 340.790 -7.268 C
ATOM 118 H3' THY 4 -293.075 341.555 -8.012 H
ATOM 119 C2' THY 4 -291.936 341.362 -6.150 C
ATOM 120 H2'1 THY 4 -292.491 341.653 -5.259 H
ATOM 121 H2'2 THY 4 -291.403 342.237 -6.528 H
ATOM 122 O3' THY 4 -294.042 340.201 -6.719 O
ATOM 123 P CYT 5 -295.323 341.142 -6.320 P
ATOM 124 O1P CYT 5 -295.419 342.403 -7.140 O
ATOM 125 O2P CYT 5 -296.609 340.366 -6.457 O
ATOM 126 O5' CYT 5 -294.934 341.455 -4.762 O
ATOM 127 C5' CYT 5 -295.179 340.440 -3.749 C
ATOM 128 H5'1 CYT 5 -296.254 340.253 -3.677 H
ATOM 129 H5'2 CYT 5 -294.692 339.506 -4.042 H
ATOM 130 C4' CYT 5 -294.637 340.897 -2.374 C
ATOM 131 H4' CYT 5 -294.875 340.147 -1.616 H
ATOM 132 O4' CYT 5 -293.185 341.025 -2.439 O
ATOM 133 C1' CYT 5 -292.789 342.198 -1.699 C
ATOM 134 H1' CYT 5 -292.890 341.966 -0.631 H
ATOM 135 N1 CYT 5 -291.391 342.586 -1.993 N
ATOM 136 C6 CYT 5 -291.064 343.331 -3.103 C
ATOM 137 H6 CYT 5 -291.813 343.526 -3.860 H
ATOM 138 C5 CYT 5 -289.812 343.838 -3.241 C
ATOM 139 H5 CYT 5 -289.560 344.436 -4.103 H
ATOM 140 C4 CYT 5 -288.878 343.565 -2.205 C
ATOM 141 N4 CYT 5 -287.693 344.149 -2.189 N
ATOM 142 H41 CYT 5 -287.622 345.062 -2.629 H
ATOM 143 H42 CYT 5 -287.086 343.895 -1.407 H
ATOM 144 N3 CYT 5 -289.144 342.803 -1.172 N
ATOM 145 C2 CYT 5 -290.386 342.280 -1.056 C
ATOM 146 O2 CYT 5 -290.575 341.554 -0.097 O
ATOM 147 C3' CYT 5 -295.162 342.303 -1.956 C
ATOM 148 H3' CYT 5 -295.954 342.676 -2.615 H
ATOM 149 C2' CYT 5 -293.913 343.185 -2.061 C
ATOM 150 H2'1 CYT 5 -293.957 344.049 -1.399 H
ATOM 151 H2'2 CYT 5 -293.824 343.541 -3.088 H
ATOM 152 O3' CYT 5 -295.608 342.342 -0.569 O
ATOM 153 O1P GUX 6 -297.254 340.324 -0.704 O
ATOM 154 P GUX 6 -297.065 341.711 -0.148 P
ATOM 155 O2P GUX 6 -297.236 341.714 1.348 O
ATOM 156 O5' GUX 6 -298.077 342.743 -0.912 O
ATOM 157 C5' GUX 6 -298.622 343.899 -0.223 C
ATOM 158 H5'1 GUX 6 -299.413 344.296 -0.864 H
ATOM 159 H5'2 GUX 6 -299.090 343.589 0.714 H
ATOM 160 C4' GUX 6 -297.562 345.005 0.020 C
ATOM 161 O4' GUX 6 -296.714 345.138 -1.150 O
ATOM 162 H4' GUX 6 -296.925 344.758 0.874 H
ATOM 163 C3' GUX 6 -298.185 346.425 0.198 C
ATOM 164 O3' GUX 6 -298.010 346.977 1.532 O
ATOM 165 H3' GUX 6 -299.243 346.455 -0.084 H
ATOM 166 C2' GUX 6 -297.406 347.316 -0.788 C
ATOM 167 H2'1 GUX 6 -297.110 348.276 -0.359 H
ATOM 168 H2'2 GUX 6 -298.030 347.510 -1.663 H
ATOM 169 C1' GUX 6 -296.186 346.471 -1.169 C
ATOM 170 H1' GUX 6 -295.420 346.557 -0.387 H
ATOM 171 N9 GUX 6 -295.602 346.735 -2.477 N
ATOM 172 C4 GUX 6 -294.270 346.761 -2.804 C
ATOM 173 N3 GUX 6 -293.171 346.643 -1.968 N
ATOM 174 C8 GUX 6 -296.218 346.813 -3.719 C
ATOM 175 H8 GUX 6 -297.305 346.772 -3.758 H
ATOM 176 N7 GUX 6 -295.368 346.911 -4.822 N
ATOM 177 C5 GUX 6 -294.102 346.867 -4.219 C
ATOM 178 C6 GUX 6 -292.820 346.878 -4.848 C
ATOM 179 O6 GUX 6 -292.639 346.974 -6.052 O
ATOM 180 N1 GUX 6 -291.785 346.759 -3.942 N
ATOM 181 H1 GUX 6 -290.852 346.754 -4.307 H
ATOM 182 C2 GUX 6 -291.993 346.651 -2.593 C
ATOM 183 N2 GUX 6 -290.880 346.456 -1.876 N
ATOM 184 H22 GUX 6 -289.976 346.419 -2.354 H
ATOM 185 CB14 GUX 6 -290.672 347.175 -0.595 C
ATOM 186 HB14 GUX 6 -291.541 347.116 0.064 H
ATOM 187 CB15 GUX 6 -289.434 346.613 0.108 C
ATOM 188 CB13 GUX 6 -290.512 348.704 -0.849 C
ATOM 189 HB13 GUX 6 -291.416 349.075 -1.340 H
ATOM 190 O13 GUX 6 -290.397 349.410 0.402 O
ATOM 191 HO13 GUX 6 -289.764 350.162 0.234 H
ATOM 192 CB12 GUX 6 -289.301 349.020 -1.777 C
ATOM 193 HB12 GUX 6 -289.667 349.008 -2.809 H
ATOM 194 O12 GUX 6 -288.789 350.350 -1.519 O
ATOM 195 HO12 GUX 6 -289.476 351.021 -1.788 H
ATOM 196 CB11 GUX 6 -288.159 347.963 -1.675 C
ATOM 197 O11 GUX 6 -288.207 347.076 -2.812 O
ATOM 198 HO11 GUX 6 -287.845 347.571 -3.601 H
ATOM 199 HB11 GUX 6 -287.199 348.487 -1.717 H
ATOM 200 CB16 GUX 6 -288.220 347.104 -0.413 C
ATOM 201 CB10 GUX 6 -287.028 346.821 0.231 C
ATOM 202 HB10 GUX 6 -286.096 347.223 -0.164 H
ATOM 203 CB17 GUX 6 -287.020 346.116 1.418 C
ATOM 204 CB9 GUX 6 -285.807 345.996 2.091 C
ATOM 205 HB9 GUX 6 -284.898 346.436 1.683 H
ATOM 206 CB8 GUX 6 -285.753 345.341 3.307 C
ATOM 207 HB8 GUX 6 -284.806 345.270 3.840 H
ATOM 208 CB20 GUX 6 -286.910 344.783 3.835 C
ATOM 209 CB7 GUX 6 -286.820 344.130 5.057 C
ATOM 210 HB7 GUX 6 -285.869 344.060 5.574 H
ATOM 211 CB6 GUX 6 -287.948 343.566 5.620 C
ATOM 212 HB6 GUX 6 -287.880 343.058 6.580 H
ATOM 213 CB5 GUX 6 -289.164 343.645 4.955 C
ATOM 214 HB5 GUX 6 -289.995 343.174 5.460 H
ATOM 215 CB22 GUX 6 -289.284 344.281 3.701 C
ATOM 216 CB23 GUX 6 -290.483 344.292 2.958 C
ATOM 217 CB4 GUX 6 -291.619 343.598 3.427 C
ATOM 218 HB4 GUX 6 -291.647 343.085 4.377 H
ATOM 219 CB3 GUX 6 -292.778 343.499 2.680 C
ATOM 220 HB3 GUX 6 -293.638 342.952 3.065 H
ATOM 221 CB2 GUX 6 -292.823 344.069 1.427 C
ATOM 222 HB2 GUX 6 -293.726 343.968 0.827 H
ATOM 223 CB1 GUX 6 -291.710 344.741 0.938 C
ATOM 224 HB1 GUX 6 -291.804 345.072 -0.079 H
ATOM 225 CB24 GUX 6 -290.542 344.953 1.702 C
ATOM 226 CB19 GUX 6 -289.422 345.701 1.219 C
ATOM 227 CB18 GUX 6 -288.203 345.554 1.921 C
ATOM 228 CB21 GUX 6 -288.137 344.869 3.148 C
ATOM 229 P CYT 7 -299.042 346.531 2.711 P
ATOM 230 O1P CYT 7 -299.577 347.792 3.333 O
ATOM 231 O2P CYT 7 -300.177 345.677 2.215 O
ATOM 232 O5' CYT 7 -297.975 345.776 3.690 O
ATOM 233 C5' CYT 7 -298.026 344.331 3.844 C
ATOM 234 H5'1 CYT 7 -299.024 344.040 4.183 H
ATOM 235 H5'2 CYT 7 -297.846 343.852 2.881 H
ATOM 236 C4' CYT 7 -296.973 343.853 4.875 C
ATOM 237 H4' CYT 7 -297.077 342.775 5.011 H
ATOM 238 O4' CYT 7 -295.649 344.159 4.351 O
ATOM 239 C1' CYT 7 -294.846 344.897 5.309 C
ATOM 240 H1' CYT 7 -294.263 344.166 5.884 H
ATOM 241 N1 CYT 7 -293.951 345.849 4.624 N
ATOM 242 C6 CYT 7 -294.326 346.466 3.451 C
ATOM 243 H6 CYT 7 -295.290 346.225 3.008 H
ATOM 244 C5 CYT 7 -293.485 347.344 2.844 C
ATOM 245 H5 CYT 7 -293.777 347.805 1.912 H
ATOM 246 C4 CYT 7 -292.240 347.604 3.488 C
ATOM 247 N4 CYT 7 -291.338 348.428 2.986 N
ATOM 248 H41 CYT 7 -291.419 348.774 2.033 H
ATOM 249 H42 CYT 7 -290.432 348.435 3.459 H
ATOM 250 N3 CYT 7 -291.877 347.051 4.620 N
ATOM 251 C2 CYT 7 -292.706 346.152 5.195 C
ATOM 252 O2 CYT 7 -292.305 345.628 6.215 O
ATOM 253 C3' CYT 7 -297.077 344.614 6.226 C
ATOM 254 H3' CYT 7 -297.991 345.216 6.245 H
ATOM 255 C2' CYT 7 -295.872 345.564 6.236 C
ATOM 256 H2'1 CYT 7 -295.476 345.750 7.235 H
ATOM 257 H2'2 CYT 7 -296.180 346.522 5.811 H
ATOM 258 O3' CYT 7 -297.142 343.754 7.412 O
ATOM 259 P THY 8 -296.032 342.612 7.832 P
ATOM 260 O1P THY 8 -296.650 341.676 8.840 O
ATOM 261 O2P THY 8 -295.488 341.776 6.706 O
ATOM 262 O5' THY 8 -294.860 343.536 8.505 O
ATOM 263 C5' THY 8 -295.124 344.238 9.750 C
ATOM 264 H5'1 THY 8 -295.934 344.956 9.591 H
ATOM 265 H5'2 THY 8 -295.444 343.527 10.517 H
ATOM 266 C4' THY 8 -293.847 344.971 10.222 C
ATOM 267 H4' THY 8 -293.066 344.242 10.460 H
ATOM 268 O4' THY 8 -293.354 345.845 9.176 O
ATOM 269 C1' THY 8 -292.657 346.953 9.779 C
ATOM 270 H1' THY 8 -291.695 346.579 10.153 H
ATOM 271 N1 THY 8 -292.464 348.031 8.793 N
ATOM 272 C6 THY 8 -293.513 348.437 7.992 C
ATOM 273 H6 THY 8 -294.488 347.989 8.140 H
ATOM 274 C5 THY 8 -293.336 349.374 7.022 C
ATOM 275 C7 THY 8 -294.524 349.807 6.180 C
ATOM 276 H71 THY 8 -294.689 350.880 6.304 H
ATOM 277 H72 THY 8 -294.321 349.620 5.124 H
ATOM 278 H73 THY 8 -295.437 349.280 6.466 H
ATOM 279 C4 THY 8 -292.018 349.965 6.789 C
ATOM 280 O4 THY 8 -291.745 350.798 5.947 O
ATOM 281 N3 THY 8 -291.031 349.515 7.638 N
ATOM 282 H3 THY 8 -290.108 349.910 7.527 H
ATOM 283 C2 THY 8 -291.199 348.631 8.679 C
ATOM 284 O2 THY 8 -290.278 348.419 9.444 O
ATOM 285 C3' THY 8 -294.091 345.913 11.431 C
ATOM 286 H3' THY 8 -295.158 345.969 11.671 H
ATOM 287 C2' THY 8 -293.561 347.288 10.972 C
ATOM 288 H2'1 THY 8 -293.013 347.824 11.747 H
ATOM 289 H2'2 THY 8 -294.401 347.908 10.651 H
ATOM 290 O3' THY 8 -293.332 345.425 12.572 O
ATOM 291 P ADE 9 -293.805 345.812 14.093 P
ATOM 292 O1P ADE 9 -295.303 345.897 14.241 O
ATOM 293 O2P ADE 9 -293.273 344.807 15.083 O
ATOM 294 O5' ADE 9 -293.109 347.288 14.218 O
ATOM 295 C5' ADE 9 -291.756 347.399 14.739 C
ATOM 296 H5'1 ADE 9 -291.740 347.035 15.769 H
ATOM 297 H5'2 ADE 9 -291.083 346.768 14.151 H
ATOM 298 C4' ADE 9 -291.261 348.867 14.697 C
ATOM 299 H4' ADE 9 -290.304 348.950 15.220 H
ATOM 300 O4' ADE 9 -291.051 349.259 13.311 O
ATOM 301 C1' ADE 9 -291.338 350.665 13.186 C
ATOM 302 H1' ADE 9 -290.515 351.225 13.646 H
ATOM 303 N9 ADE 9 -291.460 351.066 11.779 N
ATOM 304 C8 ADE 9 -292.575 351.052 10.952 C
ATOM 305 H8 ADE 9 -293.478 350.553 11.306 H
ATOM 306 N7 ADE 9 -292.430 351.691 9.728 N
ATOM 307 C5 ADE 9 -291.098 352.133 9.755 C
ATOM 308 C6 ADE 9 -290.254 352.852 8.876 C
ATOM 309 N6 ADE 9 -290.622 353.293 7.664 N
ATOM 310 H61 ADE 9 -289.942 353.800 7.096 H
ATOM 311 H62 ADE 9 -291.533 353.030 7.300 H
ATOM 312 N1 ADE 9 -288.988 353.112 9.187 N
ATOM 313 C2 ADE 9 -288.538 352.673 10.353 C
ATOM 314 H2 ADE 9 -287.501 352.896 10.571 H
ATOM 315 N3 ADE 9 -289.190 351.994 11.292 N
ATOM 316 C4 ADE 9 -290.522 351.719 10.999 C
ATOM 317 C3' ADE 9 -292.290 349.894 15.262 C
ATOM 318 H3' ADE 9 -293.202 349.413 15.628 H
ATOM 319 C2' ADE 9 -292.598 350.798 14.060 C
ATOM 320 H2'1 ADE 9 -292.803 351.830 14.351 H
ATOM 321 H2'2 ADE 9 -293.475 350.400 13.547 H
ATOM 322 O3' ADE 9 -291.748 350.742 16.313 O
ATOM 323 P CYT 10 -291.286 350.098 17.746 P
ATOM 324 O1P CYT 10 -291.820 350.899 18.906 O
ATOM 325 O2P CYT 10 -291.654 348.650 17.931 O
ATOM 326 O5' CYT 10 -289.682 350.306 17.498 O
ATOM 327 C5' CYT 10 -289.083 351.562 17.915 C
ATOM 328 H5'1 CYT 10 -289.805 352.375 17.800 H
ATOM 329 H5'2 CYT 10 -288.823 351.493 18.975 H
ATOM 330 C4' CYT 10 -287.830 351.880 17.067 C
ATOM 331 H4' CYT 10 -287.116 351.053 17.118 H
ATOM 332 O4' CYT 10 -288.257 352.103 15.688 O
ATOM 333 C1' CYT 10 -287.972 353.460 15.262 C
ATOM 334 H1' CYT 10 -286.992 353.446 14.765 H
ATOM 335 N1 CYT 10 -289.026 353.957 14.356 N
ATOM 336 C6 CYT 10 -290.356 353.837 14.690 C
ATOM 337 H6 CYT 10 -290.626 353.346 15.621 H
ATOM 338 C5 CYT 10 -291.316 354.306 13.850 C
ATOM 339 H5 CYT 10 -292.358 354.203 14.108 H
ATOM 340 C4 CYT 10 -290.884 354.918 12.643 C
ATOM 341 N4 CYT 10 -291.750 355.351 11.741 N
ATOM 342 H41 CYT 10 -292.744 355.267 11.912 H
ATOM 343 H42 CYT 10 -291.364 355.781 10.896 H
ATOM 344 N3 CYT 10 -289.625 355.075 12.320 N
ATOM 345 C2 CYT 10 -288.676 354.598 13.157 C
ATOM 346 O2 CYT 10 -287.523 354.756 12.804 O
ATOM 347 C3' CYT 10 -287.181 353.212 17.516 C
ATOM 348 H3' CYT 10 -287.388 353.425 18.570 H
ATOM 349 C2' CYT 10 -287.827 354.238 16.578 C
ATOM 350 H2'1 CYT 10 -287.223 355.134 16.454 H
ATOM 351 H2'2 CYT 10 -288.805 354.530 16.967 H
ATOM 352 O3' CYT 10 -285.744 353.155 17.284 O
ATOM 353 P CYT 11 -284.747 354.225 18.029 P
ATOM 354 O1P CYT 11 -285.244 354.651 19.387 O
ATOM 355 O2P CYT 11 -283.365 353.640 18.180 O
ATOM 356 O5' CYT 11 -284.800 355.467 16.962 O
ATOM 357 C5' CYT 11 -283.964 355.414 15.774 C
ATOM 358 H5'1 CYT 11 -282.913 355.368 16.073 H
ATOM 359 H5'2 CYT 11 -284.193 354.505 15.211 H
ATOM 360 C4' CYT 11 -284.184 356.650 14.868 C
ATOM 361 H4' CYT 11 -283.512 356.583 14.007 H
ATOM 362 O4' CYT 11 -285.549 356.680 14.370 O
ATOM 363 C1' CYT 11 -285.956 358.055 14.197 C
ATOM 364 H1' CYT 11 -285.457 358.438 13.297 H
ATOM 365 N1 CYT 11 -287.424 358.150 14.072 N
ATOM 366 C6 CYT 11 -288.247 357.602 15.026 C
ATOM 367 H6 CYT 11 -287.802 357.149 15.904 H
ATOM 368 C5 CYT 11 -289.595 357.622 14.864 C
ATOM 369 H5 CYT 11 -290.238 357.181 15.611 H
ATOM 370 C4 CYT 11 -290.099 358.238 13.686 C
ATOM 371 N4 CYT 11 -291.399 358.315 13.453 N
ATOM 372 H41 CYT 11 -292.050 357.898 14.107 H
ATOM 373 H42 CYT 11 -291.687 358.690 12.546 H
ATOM 374 N3 CYT 11 -289.338 358.824 12.792 N
ATOM 375 C2 CYT 11 -287.997 358.810 12.972 C
ATOM 376 O2 CYT 11 -287.340 359.416 12.147 O
ATOM 377 C3' CYT 11 -283.980 358.015 15.584 C
ATOM 378 H3' CYT 11 -283.732 357.883 16.643 H
ATOM 379 C2' CYT 11 -285.334 358.732 15.429 C
ATOM 380 H2'1 CYT 11 -285.232 359.812 15.294 H
ATOM 381 H2'2 CYT 11 -285.940 358.551 16.320 H
ATOM 382 O3' CYT 11 -282.957 358.789 14.924 O
ATOM 383 H3T CYT 11 -282.804 359.638 15.437 H
ATOM 384 H5T GUA 12 -294.467 362.958 2.658 H
ATOM 385 O5' GUA 12 -293.604 362.895 3.168 O
ATOM 386 C5' GUA 12 -293.020 364.212 3.293 C
ATOM 387 H5'1 GUA 12 -292.827 364.617 2.294 H
ATOM 388 H5'2 GUA 12 -293.731 364.887 3.781 H
ATOM 389 C4' GUA 12 -291.693 364.204 4.097 C
ATOM 390 H4' GUA 12 -291.262 365.210 4.085 H
ATOM 391 O4' GUA 12 -291.972 363.830 5.478 O
ATOM 392 C1' GUA 12 -291.019 362.832 5.919 C
ATOM 393 H1' GUA 12 -290.110 363.339 6.265 H
ATOM 394 N9 GUA 12 -291.560 362.012 7.000 N
ATOM 395 C8 GUA 12 -292.844 361.504 7.170 C
ATOM 396 H8 GUA 12 -293.591 361.771 6.418 H
ATOM 397 N7 GUA 12 -293.044 360.702 8.294 N
ATOM 398 C5 GUA 12 -291.769 360.703 8.878 C
ATOM 399 C6 GUA 12 -291.359 360.046 10.072 C
ATOM 400 O6 GUA 12 -292.089 359.381 10.787 O
ATOM 401 N1 GUA 12 -290.024 360.261 10.351 N
ATOM 402 H1 GUA 12 -289.648 359.835 11.187 H
ATOM 403 C2 GUA 12 -289.215 361.037 9.570 C
ATOM 404 N2 GUA 12 -287.945 361.105 9.945 N
ATOM 405 H21 GUA 12 -287.302 361.442 9.234 H
ATOM 406 H22 GUA 12 -287.615 360.489 10.697 H
ATOM 407 N3 GUA 12 -289.554 361.685 8.461 N
ATOM 408 C4 GUA 12 -290.885 361.506 8.088 C
ATOM 409 C3' GUA 12 -290.651 363.175 3.581 C
ATOM 410 H3' GUA 12 -290.898 362.814 2.577 H
ATOM 411 C2' GUA 12 -290.710 362.060 4.632 C
ATOM 412 H2'1 GUA 12 -289.788 361.486 4.703 H
ATOM 413 H2'2 GUA 12 -291.529 361.376 4.396 H
ATOM 414 O3' GUA 12 -289.334 363.799 3.588 O
ATOM 415 P GUA 13 -288.052 363.050 2.889 P
ATOM 416 O1P GUA 13 -288.450 362.050 1.834 O
ATOM 417 O2P GUA 13 -287.134 364.071 2.265 O
ATOM 418 O5' GUA 13 -287.385 362.312 4.194 O
ATOM 419 C5' GUA 13 -286.646 363.110 5.163 C
ATOM 420 H5'1 GUA 13 -285.954 363.774 4.638 H
ATOM 421 H5'2 GUA 13 -287.348 363.737 5.720 H
ATOM 422 C4' GUA 13 -285.833 362.227 6.145 C
ATOM 423 H4' GUA 13 -285.287 362.877 6.835 H
ATOM 424 O4' GUA 13 -286.724 361.370 6.915 O
ATOM 425 C1' GUA 13 -286.237 360.004 6.913 C
ATOM 426 H1' GUA 13 -285.491 359.889 7.709 H
ATOM 427 N9 GUA 13 -287.337 359.068 7.136 N
ATOM 428 C8 GUA 13 -288.601 359.074 6.554 C
ATOM 429 H8 GUA 13 -288.745 359.726 5.692 H
ATOM 430 N7 GUA 13 -289.574 358.296 7.175 N
ATOM 431 C5 GUA 13 -288.855 357.732 8.234 C
ATOM 432 C6 GUA 13 -289.346 356.863 9.247 C
ATOM 433 O6 GUA 13 -290.498 356.478 9.335 O
ATOM 434 N1 GUA 13 -288.362 356.517 10.151 N
ATOM 435 H1 GUA 13 -288.630 355.920 10.920 H
ATOM 436 C2 GUA 13 -287.081 356.981 10.078 C
ATOM 437 N2 GUA 13 -286.249 356.502 10.993 N
ATOM 438 H21 GUA 13 -285.267 356.508 10.746 H
ATOM 439 H22 GUA 13 -286.602 355.839 11.692 H
ATOM 440 N3 GUA 13 -286.577 357.791 9.152 N
ATOM 441 C4 GUA 13 -287.501 358.196 8.190 C
ATOM 442 C3' GUA 13 -284.849 361.265 5.432 C
ATOM 443 H3' GUA 13 -284.680 361.553 4.389 H
ATOM 444 C2' GUA 13 -285.538 359.896 5.554 C
ATOM 445 H2'1 GUA 13 -284.851 359.051 5.503 H
ATOM 446 H2'2 GUA 13 -286.277 359.794 4.757 H
ATOM 447 O3' GUA 13 -283.596 361.279 6.175 O
ATOM 448 P THY 14 -282.257 360.558 5.569 P
ATOM 449 O1P THY 14 -282.267 360.445 4.066 O
ATOM 450 O2P THY 14 -281.018 361.303 5.997 O
ATOM 451 O5' THY 14 -282.403 359.092 6.285 O
ATOM 452 C5' THY 14 -281.986 358.921 7.670 C
ATOM 453 H5'1 THY 14 -280.957 359.271 7.783 H
ATOM 454 H5'2 THY 14 -282.622 359.528 8.320 H
ATOM 455 C4' THY 14 -282.059 357.432 8.095 C
ATOM 456 H4' THY 14 -281.646 357.319 9.102 H
ATOM 457 O4' THY 14 -283.449 356.988 8.096 O
ATOM 458 C1' THY 14 -283.563 355.727 7.396 C
ATOM 459 H1' THY 14 -283.237 354.934 8.080 H
ATOM 460 N1 THY 14 -284.961 355.484 6.976 N
ATOM 461 C6 THY 14 -285.444 355.949 5.767 C
ATOM 462 H6 THY 14 -284.793 356.500 5.104 H
ATOM 463 C5 THY 14 -286.732 355.732 5.390 C
ATOM 464 C7 THY 14 -287.210 356.250 4.044 C
ATOM 465 H71 THY 14 -286.418 356.775 3.505 H
ATOM 466 H72 THY 14 -287.554 355.414 3.431 H
ATOM 467 H73 THY 14 -288.054 356.929 4.186 H
ATOM 468 C4 THY 14 -287.654 355.004 6.258 C
ATOM 469 O4 THY 14 -288.819 354.766 6.012 O
ATOM 470 N3 THY 14 -287.106 354.571 7.446 N
ATOM 471 H3 THY 14 -287.710 354.051 8.071 H
ATOM 472 C2 THY 14 -285.795 354.746 7.839 C
ATOM 473 O2 THY 14 -285.415 354.249 8.881 O
ATOM 474 C3' THY 14 -281.322 356.494 7.102 C
ATOM 475 H3' THY 14 -280.643 357.052 6.450 H
ATOM 476 C2' THY 14 -282.474 355.853 6.315 C
ATOM 477 H2'1 THY 14 -282.217 354.898 5.862 H
ATOM 478 H2'2 THY 14 -282.761 356.542 5.522 H
ATOM 479 O3' THY 14 -280.607 355.463 7.844 O
ATOM 480 P ADE 15 -279.209 354.859 7.239 P
ATOM 481 O1P ADE 15 -278.312 355.936 6.683 O
ATOM 482 O2P ADE 15 -278.443 354.096 8.289 O
ATOM 483 O5' ADE 15 -279.807 353.916 6.038 O
ATOM 484 C5' ADE 15 -279.925 352.473 6.196 C
ATOM 485 H5'1 ADE 15 -280.257 352.064 5.239 H
ATOM 486 H5'2 ADE 15 -278.938 352.050 6.405 H
ATOM 487 C4' ADE 15 -280.921 352.052 7.308 C
ATOM 488 H4' ADE 15 -280.573 352.363 8.298 H
ATOM 489 O4' ADE 15 -282.238 352.603 7.074 O
ATOM 490 C1' ADE 15 -283.264 351.773 7.682 C
ATOM 491 H1' ADE 15 -283.582 352.225 8.629 H
ATOM 492 N9 ADE 15 -284.420 351.691 6.784 N
ATOM 493 C8 ADE 15 -284.596 352.279 5.538 C
ATOM 494 H8 ADE 15 -283.730 352.740 5.059 H
ATOM 495 N7 ADE 15 -285.886 352.244 5.028 N
ATOM 496 C5 ADE 15 -286.598 351.540 6.012 C
ATOM 497 C6 ADE 15 -287.939 351.131 6.192 C
ATOM 498 N6 ADE 15 -288.944 351.391 5.341 N
ATOM 499 H61 ADE 15 -289.893 351.105 5.586 H
ATOM 500 H62 ADE 15 -288.745 351.917 4.497 H
ATOM 501 N1 ADE 15 -288.310 350.455 7.273 N
ATOM 502 C2 ADE 15 -287.396 350.191 8.193 C
ATOM 503 H2 ADE 15 -287.743 349.644 9.060 H
ATOM 504 N3 ADE 15 -286.109 350.516 8.194 N
ATOM 505 C4 ADE 15 -285.683 351.207 7.065 C
ATOM 506 C3' ADE 15 -281.193 350.540 7.296 C
ATOM 507 H3' ADE 15 -281.261 350.184 6.262 H
ATOM 508 C2' ADE 15 -282.567 350.424 7.965 C
ATOM 509 H2'1 ADE 15 -282.452 350.293 9.044 H
ATOM 510 H2'2 ADE 15 -283.128 349.573 7.579 H
ATOM 511 O3' ADE 15 -280.183 349.823 8.052 O
ATOM 512 P GUA 16 -279.579 348.421 7.459 P
ATOM 513 O1P GUA 16 -279.244 348.511 5.992 O
ATOM 514 O2P GUA 16 -278.347 348.008 8.224 O
ATOM 515 O5' GUA 16 -280.877 347.460 7.725 O
ATOM 516 C5' GUA 16 -281.118 346.958 9.069 C
ATOM 517 H5'1 GUA 16 -280.292 346.312 9.376 H
ATOM 518 H5'2 GUA 16 -281.157 347.802 9.764 H
ATOM 519 C4' GUA 16 -282.457 346.187 9.137 C
ATOM 520 H4' GUA 16 -282.677 345.905 10.172 H
ATOM 521 O4' GUA 16 -283.524 347.043 8.655 O
ATOM 522 C1' GUA 16 -284.610 346.232 8.162 C
ATOM 523 H1' GUA 16 -285.243 345.937 9.008 H
ATOM 524 N9 GUA 16 -285.406 346.976 7.187 N
ATOM 525 C8 GUA 16 -284.963 347.755 6.122 C
ATOM 526 H8 GUA 16 -283.886 347.915 6.032 H
ATOM 527 N7 GUA 16 -285.937 348.196 5.233 N
ATOM 528 C5 GUA 16 -287.098 347.637 5.779 C
ATOM 529 C6 GUA 16 -288.418 347.705 5.255 C
ATOM 530 O6 GUA 16 -288.731 348.300 4.240 O
ATOM 531 N1 GUA 16 -289.319 347.003 6.027 N
ATOM 532 H1 GUA 16 -290.270 346.944 5.693 H
ATOM 533 C2 GUA 16 -288.966 346.329 7.161 C
ATOM 534 N2 GUA 16 -289.949 345.655 7.746 N
ATOM 535 H21 GUA 16 -289.696 345.042 8.510 H
ATOM 536 H22 GUA 16 -290.854 345.572 7.268 H
ATOM 537 N3 GUA 16 -287.747 346.228 7.690 N
ATOM 538 C4 GUA 16 -286.766 346.911 6.969 C
ATOM 539 C3' GUA 16 -282.525 344.932 8.231 C
ATOM 540 H3' GUA 16 -281.755 344.956 7.452 H
ATOM 541 C2' GUA 16 -283.913 344.991 7.575 C
ATOM 542 H2'1 GUA 16 -284.494 344.090 7.785 H
ATOM 543 H2'2 GUA 16 -283.795 345.081 6.492 H
ATOM 544 O3' GUA 16 -282.453 343.705 9.006 O
ATOM 545 P GUA 17 -281.064 342.842 9.022 P
ATOM 546 O1P GUA 17 -279.835 343.692 9.211 O
ATOM 547 O2P GUA 17 -281.102 341.789 10.099 O
ATOM 548 O5' GUA 17 -281.134 342.228 7.500 O
ATOM 549 C5' GUA 17 -281.730 340.922 7.251 C
ATOM 550 H5'1 GUA 17 -281.452 340.608 6.241 H
ATOM 551 H5'2 GUA 17 -281.300 340.195 7.945 H
ATOM 552 C4' GUA 17 -283.277 340.934 7.372 C
ATOM 553 H4' GUA 17 -283.588 341.334 8.340 H
ATOM 554 O4' GUA 17 -283.830 341.744 6.293 O
ATOM 555 C1' GUA 17 -284.805 341.002 5.514 C
ATOM 556 H1' GUA 17 -285.801 341.170 5.941 H
ATOM 557 N9 GUA 17 -284.788 341.437 4.114 N
ATOM 558 C8 GUA 17 -283.749 342.046 3.416 C
ATOM 559 H8 GUA 17 -282.775 342.096 3.909 H
ATOM 560 N7 GUA 17 -284.063 342.567 2.166 N
ATOM 561 C5 GUA 17 -285.422 342.250 2.057 C
ATOM 562 C6 GUA 17 -286.295 342.572 0.982 C
ATOM 563 O6 GUA 17 -285.967 343.182 -0.021 O
ATOM 564 N1 GUA 17 -287.576 342.113 1.202 N
ATOM 565 H1 GUA 17 -288.267 342.301 0.491 H
ATOM 566 C2 GUA 17 -287.945 341.440 2.331 C
ATOM 567 N2 GUA 17 -289.195 340.996 2.327 N
ATOM 568 H21 GUA 17 -289.454 340.324 3.037 H
ATOM 569 H22 GUA 17 -289.786 341.173 1.507 H
ATOM 570 N3 GUA 17 -287.163 341.094 3.353 N
ATOM 571 C4 GUA 17 -285.846 341.543 3.231 C
ATOM 572 C3' GUA 17 -283.864 339.515 7.164 C
ATOM 573 H3' GUA 17 -283.096 338.745 7.290 H
ATOM 574 C2' GUA 17 -284.401 339.540 5.727 C
ATOM 575 H2'1 GUA 17 -285.244 338.865 5.581 H
ATOM 576 H2'2 GUA 17 -283.601 339.267 5.034 H
ATOM 577 O3' GUA 17 -284.962 339.303 8.096 O
ATOM 578 P ADE 18 -285.279 337.790 8.648 P
ATOM 579 O1P ADE 18 -284.035 336.966 8.866 O
ATOM 580 O2P ADE 18 -286.053 337.846 9.941 O
ATOM 581 O5' ADE 18 -286.158 337.215 7.392 O
ATOM 582 C5' ADE 18 -287.596 337.424 7.385 C
ATOM 583 H5'1 ADE 18 -288.041 336.905 8.239 H
ATOM 584 H5'2 ADE 18 -287.808 338.492 7.492 H
ATOM 585 C4' ADE 18 -288.233 336.903 6.076 C
ATOM 586 H4' ADE 18 -289.317 337.040 6.119 H
ATOM 587 O4' ADE 18 -287.728 337.663 4.947 O
ATOM 588 C1' ADE 18 -287.686 336.813 3.783 C
ATOM 589 H1' ADE 18 -288.702 336.703 3.380 H
ATOM 590 N9 ADE 18 -286.813 337.406 2.771 N
ATOM 591 C8 ADE 18 -285.468 337.731 2.866 C
ATOM 592 H8 ADE 18 -284.923 337.397 3.750 H
ATOM 593 N7 ADE 18 -284.946 338.477 1.818 N
ATOM 594 C5 ADE 18 -286.053 338.647 0.972 C
ATOM 595 C6 ADE 18 -286.296 339.295 -0.261 C
ATOM 596 N6 ADE 18 -285.382 339.973 -0.973 N
ATOM 597 H61 ADE 18 -285.679 340.449 -1.828 H
ATOM 598 H62 ADE 18 -284.431 340.035 -0.624 H
ATOM 599 N1 ADE 18 -287.499 339.277 -0.818 N
ATOM 600 C2 ADE 18 -288.475 338.639 -0.194 C
ATOM 601 H2 ADE 18 -289.438 338.640 -0.689 H
ATOM 602 N3 ADE 18 -288.419 337.978 0.955 N
ATOM 603 C4 ADE 18 -287.173 337.983 1.571 C
ATOM 604 C3' ADE 18 -287.908 335.419 5.756 C
ATOM 605 H3' ADE 18 -287.239 334.984 6.506 H
ATOM 606 C2' ADE 18 -287.226 335.473 4.374 C
ATOM 607 H2'1 ADE 18 -287.485 334.639 3.723 H
ATOM 608 H2'2 ADE 18 -286.146 335.463 4.524 H
ATOM 609 O3' ADE 18 -289.157 334.672 5.710 O
ATOM 610 P THY 19 -289.158 333.040 5.549 P
ATOM 611 O1P THY 19 -287.881 332.384 6.009 O
ATOM 612 O2P THY 19 -290.323 332.433 6.288 O
ATOM 613 O5' THY 19 -289.337 332.961 3.922 O
ATOM 614 C5' THY 19 -290.636 333.272 3.348 C
ATOM 615 H5'1 THY 19 -291.350 332.484 3.604 H
ATOM 616 H5'2 THY 19 -291.002 334.209 3.777 H
ATOM 617 C4' THY 19 -290.548 333.434 1.813 C
ATOM 618 H4' THY 19 -291.509 333.794 1.433 H
ATOM 619 O4' THY 19 -289.524 334.393 1.447 O
ATOM 620 C1' THY 19 -289.221 334.191 0.048 C
ATOM 621 H1' THY 19 -290.044 334.640 -0.523 H
ATOM 622 N1 THY 19 -287.929 334.800 -0.319 N
ATOM 623 C6 THY 19 -286.796 334.526 0.421 C
ATOM 624 H6 THY 19 -286.879 333.868 1.277 H
ATOM 625 C5 THY 19 -285.591 335.062 0.089 C
ATOM 626 C7 THY 19 -284.371 334.725 0.929 C
ATOM 627 H71 THY 19 -283.922 335.641 1.319 H
ATOM 628 H72 THY 19 -284.623 334.070 1.766 H
ATOM 629 H73 THY 19 -283.624 334.227 0.307 H
ATOM 630 C4 THY 19 -285.462 335.957 -1.062 C
ATOM 631 O4 THY 19 -284.450 336.526 -1.419 O
ATOM 632 N3 THY 19 -286.630 336.150 -1.765 N
ATOM 633 H3 THY 19 -286.581 336.736 -2.586 H
ATOM 634 C2 THY 19 -287.856 335.594 -1.477 C
ATOM 635 O2 THY 19 -288.800 335.803 -2.214 O
ATOM 636 C3' THY 19 -290.148 332.150 1.052 C
ATOM 637 H3' THY 19 -289.558 331.494 1.701 H
ATOM 638 C2' THY 19 -289.282 332.662 -0.117 C
ATOM 639 H2'1 THY 19 -289.707 332.420 -1.089 H
ATOM 640 H2'2 THY 19 -288.288 332.213 -0.052 H
ATOM 641 O3' THY 19 -291.340 331.465 0.578 O
ATOM 642 P GUA 20 -291.235 329.967 -0.087 P
ATOM 643 O1P GUA 20 -290.084 329.155 0.448 O
ATOM 644 O2P GUA 20 -292.518 329.204 0.125 O
ATOM 645 O5' GUA 20 -291.003 330.374 -1.658 O
ATOM 646 C5' GUA 20 -292.113 330.939 -2.409 C
ATOM 647 H5'1 GUA 20 -292.911 330.196 -2.501 H
ATOM 648 H5'2 GUA 20 -292.517 331.796 -1.863 H
ATOM 649 C4' GUA 20 -291.663 331.409 -3.814 C
ATOM 650 H4' GUA 20 -292.503 331.904 -4.312 H
ATOM 651 O4' GUA 20 -290.567 332.362 -3.691 O
ATOM 652 C1' GUA 20 -289.583 332.112 -4.721 C
ATOM 653 H1' GUA 20 -289.919 332.574 -5.658 H
ATOM 654 N9 GUA 20 -288.278 332.656 -4.343 N
ATOM 655 C8 GUA 20 -287.523 332.400 -3.203 C
ATOM 656 H8 GUA 20 -287.937 331.700 -2.477 H
ATOM 657 N7 GUA 20 -286.279 333.019 -3.133 N
ATOM 658 C5 GUA 20 -286.239 333.718 -4.345 C
ATOM 659 C6 GUA 20 -285.167 334.500 -4.853 C
ATOM 660 O6 GUA 20 -284.125 334.717 -4.262 O
ATOM 661 N1 GUA 20 -285.434 334.989 -6.116 N
ATOM 662 H1 GUA 20 -284.718 335.547 -6.559 H
ATOM 663 C2 GUA 20 -286.611 334.763 -6.771 C
ATOM 664 N2 GUA 20 -286.673 335.250 -8.003 N
ATOM 665 H21 GUA 20 -287.501 335.041 -8.546 H
ATOM 666 H22 GUA 20 -285.849 335.703 -8.415 H
ATOM 667 N3 GUA 20 -287.645 334.047 -6.336 N
ATOM 668 C4 GUA 20 -287.456 333.494 -5.068 C
ATOM 669 C3' GUA 20 -291.124 330.263 -4.711 C
ATOM 670 H3' GUA 20 -291.286 329.280 -4.258 H
ATOM 671 C2' GUA 20 -289.629 330.585 -4.856 C
ATOM 672 H2'1 GUA 20 -289.199 330.237 -5.794 H
ATOM 673 H2'2 GUA 20 -289.084 330.115 -4.034 H
ATOM 674 O3' GUA 20 -291.799 330.338 -6.000 O
ATOM 675 P GUA 21 -291.566 329.184 -7.141 P
ATOM 676 O1P GUA 21 -291.030 327.888 -6.589 O
ATOM 677 O2P GUA 21 -292.849 328.908 -7.883 O
ATOM 678 O5' GUA 21 -290.455 329.955 -8.069 O
ATOM 679 C5' GUA 21 -290.894 331.047 -8.927 C
ATOM 680 H5'1 GUA 21 -291.710 330.704 -9.568 H
ATOM 681 H5'2 GUA 21 -291.278 331.860 -8.304 H
ATOM 682 C4' GUA 21 -289.741 331.575 -9.814 C
ATOM 683 H4' GUA 21 -290.108 332.411 -10.418 H
ATOM 684 O4' GUA 21 -288.646 332.052 -8.982 O
ATOM 685 C1' GUA 21 -287.380 331.674 -9.571 C
ATOM 686 H1' GUA 21 -287.124 332.395 -10.357 H
ATOM 687 N9 GUA 21 -286.325 331.648 -8.561 N
ATOM 688 C8 GUA 21 -286.347 331.063 -7.300 C
ATOM 689 H8 GUA 21 -287.251 330.522 -7.019 H
ATOM 690 N7 GUA 21 -285.209 331.235 -6.518 N
ATOM 691 C5 GUA 21 -284.393 331.994 -7.366 C
ATOM 692 C6 GUA 21 -283.083 332.472 -7.094 C
ATOM 693 O6 GUA 21 -282.474 332.277 -6.057 O
ATOM 694 N1 GUA 21 -282.563 333.188 -8.152 N
ATOM 695 H1 GUA 21 -281.637 333.575 -8.039 H
ATOM 696 C2 GUA 21 -283.241 333.398 -9.319 C
ATOM 697 N2 GUA 21 -282.549 334.025 -10.263 N
ATOM 698 H21 GUA 21 -283.018 334.225 -11.139 H
ATOM 699 H22 GUA 21 -281.605 334.375 -10.060 H
ATOM 700 N3 GUA 21 -284.458 332.954 -9.630 N
ATOM 701 C4 GUA 21 -285.075 332.234 -8.603 C
ATOM 702 C3' GUA 21 -289.123 330.490 -10.739 C
ATOM 703 H3' GUA 21 -289.682 329.548 -10.688 H
ATOM 704 C2' GUA 21 -287.696 330.310 -10.202 C
ATOM 705 H2'1 GUA 21 -286.976 330.040 -10.979 H
ATOM 706 H2'2 GUA 21 -287.694 329.528 -9.438 H
ATOM 707 O3' GUA 21 -289.058 330.958 -12.102 O
ATOM 708 H3T GUA 21 -288.706 330.223 -12.687 H
Topic: modified isolated base--wrong pdb format? (Read 24631 times)