Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

Author Topic: Single strand DNA  (Read 14289 times)

Offline sioc123456

  • with-posts
  • *
  • Posts: 1
    • View Profile
Single strand DNA
« on: December 15, 2010, 02:38:31 am »
How to validate the single strand structure from NMR calculation?

Offline xiangjun

  • Administrator
  • with-posts
  • *****
  • Posts: 1650
    • View Profile
    • 3DNA homepage
Re: Single strand DNA
« Reply #1 on: December 15, 2010, 08:52:10 pm »
I am not sure I understand the question. 3DNA does not perform any structure validation; it simply calculates some geometrical parameters given a structure (including single stranded DNA) in PDB format. As far as (NMR) structure validation goes, have a look of CING, or MolProbity.

HTH,

Xiang-Jun

 

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University