RNA structures (DSSR)

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no nucleotide in some structures Started by shuxiang	2 Replies 83665 Views	February 11, 2019, 11:41:21 am by shuxiang
Figure 2. Molecular images of RNA secondary structural motifs incorporating each Started by shuxiang	6 Replies 109631 Views	June 10, 2019, 01:03:27 pm by shuxiang
Figure 1. Comparison of the hydrogen-bonding interactions, chemical structures Started by shuxiang	10 Replies 124105 Views	June 10, 2019, 01:05:43 pm by shuxiang
Figure 3. Scatter plots of the rigid-body components—shear, stretch, and opening Started by shuxiang	1 Replies 82830 Views	June 10, 2019, 01:24:06 pm by shuxiang
Figure 4. Succession of configurations illustrating the rigid-body motions Started by shuxiang	1 Replies 82435 Views	June 14, 2019, 03:11:58 pm by shuxiang
Figure 5. Molecular images illustrating hydrogen bonds (dashed lines) shared Started by shuxiang	1 Replies 83962 Views	June 14, 2019, 03:55:57 pm by shuxiang
strange sequence and dot-bracket notation for dssr output Started by shuxiang	2 Replies 88176 Views	June 21, 2019, 03:31:57 pm by shuxiang
Figure 6. Molecular images of multiplets with two or more modes of G·A Started by shuxiang	6 Replies 141409 Views	June 26, 2019, 01:20:18 pm by shuxiang
How to display RNA secondary structure with & in forna? Started by shuxiang	2 Replies 82367 Views	May 15, 2018, 11:35:00 am by shuxiang
DSSR-enhanced visualization web server cannot display ribosome structures? Started by shuxiang	4 Replies 92873 Views	May 17, 2018, 12:58:25 pm by shuxiang
Web DSSR for dissecting the spatial structures of nucleic acids Started by shuxiang	0 Replies 88293 Views	July 29, 2018, 02:16:30 pm by shuxiang
strange residue number after dssr --view option Started by shuxiang	2 Replies 83945 Views	August 06, 2018, 05:40:26 pm by shuxiang
Building G-quadruplexes Started by shr	5 Replies 184744 Views	June 23, 2025, 11:35:09 am by shr
Torsion angles Started by sharvey7	1 Replies 87539 Views	July 16, 2015, 02:59:27 pm by xiangjun
Phosphodiester bond length Started by sharanr2	6 Replies 128186 Views	June 10, 2016, 10:21:35 am by xiangjun
DSSR Download and Installation Started by se3DNAcct	1 Replies 73365 Views	September 26, 2018, 06:48:51 pm by xiangjun
Query in 3DNA-DSSR output vs W3DNA output Started by sankaran	1 Replies 101768 Views	February 28, 2021, 10:22:26 am by xiangjun
Turn of Auxiliary File Creation (x3dna-dssr) Started by saladi	8 Replies 106376 Views	March 21, 2018, 11:53:35 pm by xiangjun
x3dna-dssr -h no response Started by rvandamm	1 Replies 143172 Views	January 15, 2021, 09:53:57 pm by xiangjun
Using --helical-axis with the --nmr option in DSSR Started by rkpoppleton	2 Replies 165014 Views	June 13, 2025, 08:52:05 am by rkpoppleton

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University

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