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MD simulations

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[1] Update of do_x3dna package

[2] Looking for a way to speed up do_x3dna process.

[3] Clarification on how DNA radius is computed from 3DNA/DSSR

[4] generate DNA pdb file for Gromacs

[5] Base pair number not staying constant in simulations

[6] Do I need gromacs to use dnaMD for simulations?

[7] overwritten output files

[8] Gromacs missing ' P ' atom

[9] DNA step parameters

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University

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