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MD simulations

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[1] Clarification on how DNA radius is computed from 3DNA/DSSR

[2] generate DNA pdb file for Gromacs

[3] Base pair number not staying constant in simulations

[4] Do I need gromacs to use dnaMD for simulations?

[5] Update of do_x3dna package

[6] overwritten output files

[7] Gromacs missing ' P ' atom

[8] DNA step parameters

[9] Superimpose representative cluster of a RNA strand after simulation

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University

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